Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq164 196 9e-45 seq244 152 1e-31 >seq164 Length=316633 Score = 196 bits (216), Expect = 9e-45 Identities = 482/720 (67%), Gaps = 27/720 (4%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||||| |||||| || || ||||| | || ||||||||| || |||||||| | ||| Sbjct 149193 GTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTGAGAGGTGGA 149252 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA-GGC 213066 || || ||||| || || || ||||| ||| | ||| || |||| | ||| ||| Sbjct 149253 AGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGCAATGTTGGC 149312 Query 213067 GCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || | |||||||||| ||| || | ||||||||||||| Sbjct 149313 CTTCAATGAAT-CCCAGTCCCAAAGATCAGTAGGGG---------TGACGTTCCACATGT 149362 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | | |||||||| |||| | |||||| || | ||| | || || || ||| ||| Sbjct 149363 CGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACCAAGCT 149422 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||| | | ||||||||| || |||||||| | ||| ||||||||||| |||| Sbjct 149423 CCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGATCTGAG 149482 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||||||||||| | |||||||| || |||||||| | | |||| |||||| Sbjct 149483 TGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGCATCAG 149542 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAG-CACTCC 213365 | || || ||||| |||| |||||| |||| ||| || | || | || | ||| Sbjct 149543 CGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATT-GCTGCGGCGTGCCTCT 149601 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 || | |||||| || |||||||| ||||| |||||||| ||| ||| | ||| Sbjct 149602 TCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTGAGTG 149661 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCG----TCCTGCACAAACTCAGG 213481 || | | || | || | || || | || || | | || || | || Sbjct 149662 ACCTCGTGGAGCTTCTGGAAAT----CATATTCGCCACGATGATAGTCGACGAAAGCGGG 149717 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCCATG 213539 || || | | ||| |||||| || || ||||| ||| ||| | |||||||| ||| Sbjct 149718 TAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTG-GAG-CGGTGTACTCAATG 149775 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 ||||| ||||| ||||| | ||||| || |||| ||||| ||| ||| ||||| Sbjct 149776 ATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGG-TTGCTCTTGCG 149834 Query 213600 TTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 | ||| | ||||||||||||||| || ||| || ||||| ||||||| | || || Sbjct 149835 GTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGAT 149894 >seq244 Length=165466 Score = 152 bits (168), Expect = 1e-31 Identities = 346/519 (67%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| ||| ||| ||||||||||| Sbjct 56014 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTC 56073 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| ||||| |||| | ||| || | | | ||| | | ||||| Sbjct 56074 CATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAG 56133 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || || || |||| ||||| | ||||||||||| |||||||| | || | Sbjct 56134 ACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGC 56193 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | | ||||||| ||| || ||||| || | || | Sbjct 56194 GCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTC 56253 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGC------AGGTGCTTGGCATAGAGCATGCA 48132 | || | ||| | ||| |||| ||||| || | |||| | ||| Sbjct 56254 TTGCAC-----AGCCTGCTTGCTTGG-GCGCGACTTGAGGTG---GGAAAAGAGGAGGCA 56304 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| |||||| || ||||| || ||||||| | ||||||||| |||||| Sbjct 56305 GGCAAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACC 56364 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||||| || | || ||||||||||| || | || || | || ||||||||| Sbjct 56365 TGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGAT 56424 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || || || ||| | || | | || || | | |||||| || | ||| Sbjct 56425 ACCCTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGTGAT 56484 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||| ||| |||||||| |||||||| |||||| || Sbjct 56485 CCATCGAAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 56523 Score = 93.3 bits (102), Expect = 8e-14 Identities = 174/255 (68%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||| |||||||||| | ||||| || |||||| || ||||||||| | ||||| Sbjct 56648 GTACGTCTCAGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAACGCGCCTC 56707 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || || ||||| | ||||| ||| | || |||||| ||||| || ||||| || Sbjct 56708 GGGGACTTGTACTTCGCCGCTGAATCGCTCGACCAAATTCTCGTTGACAATGCCATCGGA 56767 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGC 48600 || || |||||||||||||| || | ||| |||||||| || | | | Sbjct 56768 TGCGGCGAAGAAGGCAAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCATTCAATCGCTT 56827 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||||| | || | |||||| || || | || || |||||||||| || || Sbjct 56828 GTTCCAGTCGTGGAGATCTTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCTTC 56887 Query 48661 TGCTTTTTTGTACAT 48675 || || |||||||| Sbjct 56888 AGCCTTCTTGTACAT 56902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527851232000