Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq244 143 5e-29 seq164 113 8e-20 >seq244 Length=165466 Score = 143 bits (158), Expect = 5e-29 Identities = 313/470 (67%), Gaps = 17/470 (4%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | | || |||||| ||| || | |||||||| || || ||||| ||||| |||| Sbjct 56474 AGAACTCCACCTTTGGCACGCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCA 56415 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 ||||| | ||||| ||||||||||||||||| || || |||||| || || || Sbjct 56414 GCGGTGCCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCT 56355 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | ||||| ||||||||| | ||||||||| | |||| || ||||||||||| |||| Sbjct 56354 TCTCCAATGAGCTCATCTCTCGTGACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCT 56295 Query 26039 ACACGGGCCACTTGCTCCA--CAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAG 26095 | |||| ||| | | || |||| || | || | ||||||| | Sbjct 56294 TTTC---CCAC---CTCAAGTCGCGCCCAAGCAAGCAGGCTGTGCAAGACATCATCACTG 56241 Query 26096 AGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCA 26155 |||| || || ||| ||||||| | |||| Sbjct 56240 AGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCA 56181 Query 26156 TGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGT--GCCA 26213 |||| || |||||| |||| |||||||||| ||| ||||||| |||||| | ||| Sbjct 56180 TGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCC- 56122 Query 26214 GCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATA 26271 || || | || |||||| |||| | || || || ||||||||||| ||||| Sbjct 56121 -CTCGGCAACAACAAGTTCTACA--ACGCTACCAATCCCTTTGACTTTATGGAGAACATC 56065 Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || ||| || |||||||||||||| || ||| | || || ||||| || Sbjct 56064 TCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 56015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 177/258 (69%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||||||||||||| || || |||||| || || ||||||||||| Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||| || | ||| |||| || | || || ||||| ||| || ||| | Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTCC 56792 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || ||||| || || ||||||||| || |||| || Sbjct 56791 CACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCGA 56732 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | ||||| || | ||||| || |||||||| || ||||| || Sbjct 56731 TTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATG 56672 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 56671 GAGAACATCCACTCTGAG 56654 >seq164 Length=316633 Score = 113 bits (124), Expect = 8e-20 Identities = 341/520 (66%), Gaps = 10/520 (2%) Strand=Plus/Plus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 ||||||| ||||| || | ||| | ||||| ||| | ||| || | |||| || Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076 Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073 || | ||| |||| ||| | || |||||| | ||| |||||||| || || | || Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136 Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133 | || | | || ||| ||| || | |||||||| ||||| | || | ||| Sbjct 150137 AAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAA 150196 Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193 | ||| |||||||| ||||| ||||||| ||| | || || || ||||| || |||||| Sbjct 150197 ACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCC 150256 Query 222194 TGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 ||||| || ||| | ||| | |||| ||| ||| || | || | || || |||| Sbjct 150257 TGATCGACGTATC--GTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGG 150314 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG-GCAGACA 222308 | ||| ||||| || ||| || | || || | || ||| || || || Sbjct 150315 AGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGC---GGATACGATGCACATTCA 150371 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || ||||| || || || || |||||||| || |||| || ||||| ||| | Sbjct 150372 GACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATAC 150431 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || || ||||||| || | || || ||||| ||||| || | | | || Sbjct 150432 CTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGG 150491 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 | ||||| || || || || ||| ||||| ||||| Sbjct 150492 TGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTA 150531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839865512000