Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq244 143 5e-29
seq164 113 8e-20
>seq244
Length=165466
Score = 143 bits (158), Expect = 5e-29
Identities = 313/470 (67%), Gaps = 17/470 (4%)
Strand=Plus/Minus
Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918
||| | | || |||||| ||| || | |||||||| || || ||||| ||||| ||||
Sbjct 56474 AGAACTCCACCTTTGGCACGCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCA 56415
Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978
||||| | ||||| ||||||||||||||||| || || |||||| || || ||
Sbjct 56414 GCGGTGCCTTTGCATCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCT 56355
Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
| ||||| ||||||||| | ||||||||| | |||| || ||||||||||| ||||
Sbjct 56354 TCTCCAATGAGCTCATCTCTCGTGACGAGGGTATGCACACTGACTTTGCCTGCCTCCTCT 56295
Query 26039 ACACGGGCCACTTGCTCCA--CAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAG 26095
| |||| ||| | | || |||| || | || | ||||||| |
Sbjct 56294 TTTC---CCAC---CTCAAGTCGCGCCCAAGCAAGCAGGCTGTGCAAGACATCATCACTG 56241
Query 26096 AGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCA 26155
|||| || || ||| ||||||| | ||||
Sbjct 56240 AGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCA 56181
Query 26156 TGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGT--GCCA 26213
|||| || |||||| |||| |||||||||| ||| ||||||| |||||| | |||
Sbjct 56180 TGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCC- 56122
Query 26214 GCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATA 26271
|| || | || |||||| |||| | || || || ||||||||||| |||||
Sbjct 56121 -CTCGGCAACAACAAGTTCTACA--ACGCTACCAATCCCTTTGACTTTATGGAGAACATC 56065
Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|| ||| || |||||||||||||| || ||| | || || ||||| ||
Sbjct 56064 TCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 56015
Score = 98.7 bits (108), Expect = 2e-15
Identities = 177/258 (69%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | ||||||||||||||| || || |||||| || || |||||||||||
Sbjct 56911 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTC 56852
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594
|||| || | ||| |||| || | || || ||||| ||| || ||| |
Sbjct 56851 TCCAAAGATCTCCACGACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTCATCTCC 56792
Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | || ||||| || || || ||||| || || ||||||||| || |||| ||
Sbjct 56791 CACGTCCTTGCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTCGAGCGA 56732
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | | ||||| || | ||||| || |||||||| || ||||| ||
Sbjct 56731 TTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATG 56672
Query 25714 GAAAATGTGCACTCTGAG 25731
|| || | |||||||||
Sbjct 56671 GAGAACATCCACTCTGAG 56654
>seq164
Length=316633
Score = 113 bits (124), Expect = 8e-20
Identities = 341/520 (66%), Gaps = 10/520 (2%)
Strand=Plus/Plus
Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013
||||||| ||||| || | ||| | ||||| ||| | ||| || | |||| ||
Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076
Query 222014 CAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAG 222073
|| | ||| |||| ||| | || |||||| | ||| |||||||| || || | ||
Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136
Query 222074 AGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAA 222133
| || | | || ||| ||| || | |||||||| ||||| | || | |||
Sbjct 150137 AAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAA 150196
Query 222134 ATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCC 222193
| ||| |||||||| ||||| ||||||| ||| | || || || ||||| || ||||||
Sbjct 150197 ACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCC 150256
Query 222194 TGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
||||| || ||| | ||| | |||| ||| ||| || | || | || || ||||
Sbjct 150257 TGATCGACGTATC--GTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGG 150314
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG-GCAGACA 222308
| ||| ||||| || ||| || | || || | || ||| || || ||
Sbjct 150315 AGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGC---GGATACGATGCACATTCA 150371
Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368
|| ||||| || || || || |||||||| || |||| || ||||| ||| |
Sbjct 150372 GACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATAC 150431
Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428
| || || || ||||||| || | || || ||||| ||||| || | | | ||
Sbjct 150432 CTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGG 150491
Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468
| ||||| || || || || ||| ||||| |||||
Sbjct 150492 TGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTA 150531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928839865512000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |