Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq164 208 9e-49 seq244 91.5 2e-13 >seq164 Length=316633 Score = 208 bits (230), Expect = 9e-49 Identities = 1020/1614 (63%), Gaps = 72/1614 (4%) Strand=Plus/Minus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| | ||||| || || | ||||| ||||| ||||||||||| || | | |||| Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555 Query 75279 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 75337 |||| || | ||||| | | || |||| || || | || ||||||||||| || Sbjct 150554 CATATAACTACATGTCAAACAAATAC-TTCACACATGCCTCGCCGACCCTCTTCAACGCA 150496 Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397 || || || ||| || |||||| ||||||||| |||| || |||||| || || Sbjct 150495 GGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATT 150436 Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457 | |||||||||| || || | | ||||| || || ||| ||||| |||||| Sbjct 150435 GAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATT 150376 Query 75458 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 75517 || || | | ||| | | | || | | || |||| | || || |||||| Sbjct 150375 GGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACC 150316 Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577 || ||||| | || || ||||| ||||| | ||| ||| || || || || |||| Sbjct 150315 TCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAG 150256 Query 75578 GCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634 | ||| | || ||| || |||| |||| | || |||||||| ||||| | Sbjct 150255 GGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTT 150196 Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCT 75693 | | |||||||| || | || || ||| | ||||||| || ||| | | || | Sbjct 150195 TTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTT 150137 Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATG 75753 || | | || ||||| || ||| | ||||||||||| || | ||| || |||| Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077 Query 75754 GTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGA 75813 | |||| ||||| || || | || || || ||| |||||| ||||| |||||||| Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGA 150017 Query 75814 AGCCCTCTAC--------------------ACAAA-GT---------ATGA--------- 75834 | |||||| ||||| || |||| Sbjct 150016 GGAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTC 149957 Query 75835 ----AGAGGAGGGTAGAGCCAATGCGACTGTACCAGCC---GCC--GATGTT-TGGAAGG 75884 | | ||| || || | || | || | ||| ||| || | | ||| | | Sbjct 149956 CCAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATG 149897 Query 75885 CTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTA 75944 | || || | || ||||| |||||||||| ||||||||||| ||||||||||| || | Sbjct 149896 CAATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCA 149837 Query 75945 ACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAA 76004 || ||||| ||||| ||||| |||||||| ||| || || || || ||||| || | Sbjct 149836 ACCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGA 149777 Query 76005 TTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTC 76064 | | |||||||| | | |||||| || || ||||| |||| || | || || | Sbjct 149776 TCATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTAC 149717 Query 76065 CAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAA 76124 | | ||| | | | | || | ||||| | || || || || |||| Sbjct 149716 CCGCTTTCGTCGACTATCATCGTGGCGAATATGATTTCCAGAAGCTCCACGAGGTCACTC 149657 Query 76125 AGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG 76184 || | | || || |||||| | |||| || |||| || ||||| || | Sbjct 149656 AGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAAGAGG 149597 Query 76185 CGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 | || ||| | | ||| ||||||| || | ||||| ||||||||||| |||| Sbjct 149596 CACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCTGATG 149537 Query 76245 TATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTA 76304 ||| || |||| | |||||||| || || | | || | || ||| | Sbjct 149536 CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAACACTCAGA 149477 Query 76305 TCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAG 76364 ||||||||||||| || || || |||| || || || | || | | | | Sbjct 149476 TCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAAGGAGCTTG 149417 Query 76365 GTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGT 76424 || | |||| || | || |||||||||| ||||||||| | | || | || |||| Sbjct 149416 GTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATACGACATGT 149357 Query 76425 GGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACG-CATCAAGG 76481 |||| || | || | || | | | ||||||||| ||| ||| | || || | Sbjct 149356 -GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGAT----TCATTGAAGGCCAACATTG 149303 Query 76482 ---AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 76538 || | ||| | || ||| || | | || || |||||||| || |||||| | | Sbjct 149302 CTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACCTCTC 149243 Query 76539 AAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAA 76598 | || | || || || || |||||||| ||||| || ||||||| ||| | | Sbjct 149242 AGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTACTCTCGCCGTG 149183 Query 76599 CCCTCGCAGGTGAGTTTGTCATTGTCAA--CAAGCACCTCGTCAATGACCTCAAGAAGAT 76656 | | || |||||||| |||| || || | || | || ||||| | || Sbjct 149182 TCTTGGCCGGTGAGTTCCAAGTTGTAAATCCATG--GCTGTTGAAGGACCTTGTAGATAT 149125 Query 76657 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 76716 ||||| ||||| | | |||||| | | || | || || ||||| ||||| | Sbjct 149124 GGGTCTGTGGTCGGACAACATGAAGAACCGAATCATTGCAGAAGGCGGTTCTATTCAGAG 149065 Query 76717 TATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT 76770 || | | ||||| ||||| |||||| ||||||| || || |||||||| Sbjct 149064 GATTCCCAACATCCCTGATGACATCAAGGCTCTCTACAAGACCGTTTGGGAAAT 149011 >seq244 Length=165466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 294/444 (66%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTA 65137 ||| ||| | || ||||| || ||||||||||||||| ||| | || ||| | | Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | |||||||| || ||||||||||| || |||||| ||||| || || | Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA-T 65256 | || || |||||| | ||| || |||||| || ||| || | | || | Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGCC-TGC--CTCCTCTTTTCCCACCTCAAGT 56280 Query 65257 AGA-CCCA--CTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313 | |||| | | | | || | || | |||| | | ||||| || |||||| | Sbjct 56279 CGCGCCCAAGCAAGC-AGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAG 56221 Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373 | |||| | | || | | ||||| || |||| ||||| | |||| | Sbjct 56220 GAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGC 56161 Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATT-TG 65432 |||||||||||| ||| | || ||||| ||| | | || | || || | Sbjct 56160 CAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAA-CAACAAGTTCTA 56102 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 ||||| | ||||| |||||||||||||| ||||| ||| | || ||||||||||| Sbjct 56101 CAACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTT 56042 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| ||||| ||||| Sbjct 56041 CTTCGAGAAGCGTGTTGGTGACTA 56018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566430724000