Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq164 208 9e-49
seq244 91.5 2e-13
>seq164
Length=316633
Score = 208 bits (230), Expect = 9e-49
Identities = 1020/1614 (63%), Gaps = 72/1614 (4%)
Strand=Plus/Minus
Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278
||||| | ||||| || || | ||||| ||||| ||||||||||| || | | ||||
Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555
Query 75279 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 75337
|||| || | ||||| | | || |||| || || | || ||||||||||| ||
Sbjct 150554 CATATAACTACATGTCAAACAAATAC-TTCACACATGCCTCGCCGACCCTCTTCAACGCA 150496
Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397
|| || || ||| || |||||| ||||||||| |||| || |||||| || ||
Sbjct 150495 GGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATT 150436
Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457
| |||||||||| || || | | ||||| || || ||| ||||| ||||||
Sbjct 150435 GAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATT 150376
Query 75458 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 75517
|| || | | ||| | | | || | | || |||| | || || ||||||
Sbjct 150375 GGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACC 150316
Query 75518 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 75577
|| ||||| | || || ||||| ||||| | ||| ||| || || || || ||||
Sbjct 150315 TCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAG 150256
Query 75578 GCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATC 75634
| ||| | || ||| || |||| |||| | || |||||||| ||||| |
Sbjct 150255 GGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTT 150196
Query 75635 ATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCT 75693
| | |||||||| || | || || ||| | ||||||| || ||| | | || |
Sbjct 150195 TTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTT 150137
Query 75694 CTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATG 75753
|| | | || ||||| || ||| | ||||||||||| || | ||| || ||||
Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077
Query 75754 GTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGA 75813
| |||| ||||| || || | || || || ||| |||||| ||||| ||||||||
Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGA 150017
Query 75814 AGCCCTCTAC--------------------ACAAA-GT---------ATGA--------- 75834
| |||||| ||||| || ||||
Sbjct 150016 GGAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTC 149957
Query 75835 ----AGAGGAGGGTAGAGCCAATGCGACTGTACCAGCC---GCC--GATGTT-TGGAAGG 75884
| | ||| || || | || | || | ||| ||| || | | ||| | |
Sbjct 149956 CCAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATG 149897
Query 75885 CTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTA 75944
| || || | || ||||| |||||||||| ||||||||||| ||||||||||| || |
Sbjct 149896 CAATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCA 149837
Query 75945 ACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAA 76004
|| ||||| ||||| ||||| |||||||| ||| || || || || ||||| || |
Sbjct 149836 ACCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGA 149777
Query 76005 TTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTC 76064
| | |||||||| | | |||||| || || ||||| |||| || | || || |
Sbjct 149776 TCATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTAC 149717
Query 76065 CAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAA 76124
| | ||| | | | | || | ||||| | || || || || ||||
Sbjct 149716 CCGCTTTCGTCGACTATCATCGTGGCGAATATGATTTCCAGAAGCTCCACGAGGTCACTC 149657
Query 76125 AGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG 76184
|| | | || || |||||| | |||| || |||| || ||||| || |
Sbjct 149656 AGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAAGAGG 149597
Query 76185 CGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244
| || ||| | | ||| ||||||| || | ||||| ||||||||||| ||||
Sbjct 149596 CACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCTGATG 149537
Query 76245 TATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTA 76304
||| || |||| | |||||||| || || | | || | || ||| |
Sbjct 149536 CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAACACTCAGA 149477
Query 76305 TCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAG 76364
||||||||||||| || || || |||| || || || | || | | | |
Sbjct 149476 TCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAAGGAGCTTG 149417
Query 76365 GTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGT 76424
|| | |||| || | || |||||||||| ||||||||| | | || | || ||||
Sbjct 149416 GTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATACGACATGT 149357
Query 76425 GGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACG-CATCAAGG 76481
|||| || | || | || | | | ||||||||| ||| ||| | || || |
Sbjct 149356 -GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGAT----TCATTGAAGGCCAACATTG 149303
Query 76482 ---AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCAC 76538
|| | ||| | || ||| || | | || || |||||||| || |||||| | |
Sbjct 149302 CTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACCTCTC 149243
Query 76539 AAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAA 76598
| || | || || || || |||||||| ||||| || ||||||| ||| | |
Sbjct 149242 AGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTACTCTCGCCGTG 149183
Query 76599 CCCTCGCAGGTGAGTTTGTCATTGTCAA--CAAGCACCTCGTCAATGACCTCAAGAAGAT 76656
| | || |||||||| |||| || || | || | || ||||| | ||
Sbjct 149182 TCTTGGCCGGTGAGTTCCAAGTTGTAAATCCATG--GCTGTTGAAGGACCTTGTAGATAT 149125
Query 76657 TGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAA 76716
||||| ||||| | | |||||| | | || | || || ||||| ||||| |
Sbjct 149124 GGGTCTGTGGTCGGACAACATGAAGAACCGAATCATTGCAGAAGGCGGTTCTATTCAGAG 149065
Query 76717 TATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGGGAAAT 76770
|| | | ||||| ||||| |||||| ||||||| || || ||||||||
Sbjct 149064 GATTCCCAACATCCCTGATGACATCAAGGCTCTCTACAAGACCGTTTGGGAAAT 149011
>seq244
Length=165466
Score = 91.5 bits (100), Expect = 2e-13
Identities = 294/444 (66%), Gaps = 12/444 (3%)
Strand=Plus/Minus
Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTA 65137
||| ||| | || ||||| || ||||||||||||||| ||| | || ||| | |
Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397
Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197
| | ||| | |||||||| || ||||||||||| || |||||| ||||| || || |
Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337
Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAA-T 65256
| || || |||||| | ||| || |||||| || ||| || | | || |
Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGCC-TGC--CTCCTCTTTTCCCACCTCAAGT 56280
Query 65257 AGA-CCCA--CTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAA 65313
| |||| | | | | || | || | |||| | | ||||| || |||||| |
Sbjct 56279 CGCGCCCAAGCAAGC-AGGCTGTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAG 56221
Query 65314 GGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCC 65373
| |||| | | || | | ||||| || |||| ||||| | |||| |
Sbjct 56220 GAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGC 56161
Query 65374 GAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATT-TG 65432
|||||||||||| ||| | || ||||| ||| | | || | || || |
Sbjct 56160 CAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGCCCTCGGCAA-CAACAAGTTCTA 56102
Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492
||||| | ||||| |||||||||||||| ||||| ||| | || |||||||||||
Sbjct 56101 CAACGCTACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTT 56042
Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516
||| |||||||| ||||| |||||
Sbjct 56041 CTTCGAGAAGCGTGTTGGTGACTA 56018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596566430724000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |