Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq164 123 7e-23 seq111 93.3 1e-13 >seq164 Length=316633 Score = 123 bits (136), Expect = 7e-23 Identities = 326/497 (66%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 156026 TGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCG 156082 |||||| ||||| || || || ||| | | | || ||||||||||| || || || Sbjct 150211 TGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACGTATCG 150270 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 ||||| || ||| |||| | ||||| || || | ||||||||| || ||||||||||| Sbjct 150271 TGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTGGTTCC 150330 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 || ||||| || |||| | ||| | | ||| | || || |||||||| || | Sbjct 150331 GCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCAATACCGCCAGCAGT 150390 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || ||||| || || ||| | || | | ||||||||||| |||||| | Sbjct 150391 CTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTATCATCCTT 150450 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 || | || |||| || | ||| ||| || || || |||||||| || || Sbjct 150451 GATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGT 150510 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTC 156382 || | ||||| | || || || || ||||| || | |||||||| | ||| Sbjct 150511 CGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAGTTATATGTCTCGATCGCGGACTC 150570 Query 156383 AAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTAC 156442 || | |||||||| | | || || | ||| ||| || |||||||| || | Sbjct 150571 AATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGC 150630 Query 156443 AATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502 || | |||| |||| || ||||||| ||||| || || || || ||||| | | Sbjct 150631 AACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTG 150690 Query 156503 AAACAGAAAATCACGGT 156519 | | |||||||||| Sbjct 150691 ATAGTTGAAATCACGGT 150707 Score = 87.8 bits (96), Expect = 5e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAAT 155641 ||| ||| ||| ||| || |||||||| ||| | || | || |||| || | || Sbjct 149719 AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAG-CGGTGTACTCAATGAT 149777 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 |||| ||| ||||||||||| ||| || || || ||||||||||| || | ||| Sbjct 149778 CTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTT 149837 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 || ||||||||||| || || |||||| |||| ||||| |||| Sbjct 149838 GCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTG 149882 >seq111 Length=534957 Score = 93.3 bits (102), Expect = 1e-13 Identities = 375/576 (65%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483 || |||||||| |||| || || ||| | ||| | | || ||||| ||| ||| | Sbjct 260980 CAGACATGGACTTTGTACGCGTCCGATACCTCAAACAATCGTTCCTTGAGGAAAGCG-GC 261038 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| || || | |||||||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 261039 TGCTCCATGCGCAATCATACAATCGCGTTCCATCTCTCCGAACCGAAGACCTCCATCACG 261098 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 ||| | |||||| | ||||| | || ||| | | ||||| || || ||| Sbjct 261099 AGCACGACCCTCTACTGGCTGTCTTGTTAGAATCTGTAGTGGACCACGGGCACGAGCATG 261158 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 ||| |||| ||||| ||| | | ||||| || ||| ||||| | ||| | Sbjct 261159 AATCTTGTCATCCACCATGTGCCTCAAGCGCTGATAATATGTAGGACCTAAGAACACCTG 261218 Query 251664 CGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATA 251723 | | ||| || || || || | |||| ||||| ||||| ||| || | Sbjct 261219 GGCACGCAATTTCTTGCCGGTATGTCCGTTGTACATGACTTCAAAGCCACGCTGTTGGAA 261278 Query 251724 ACCAAGTTTCTGTAGCTCTGAAGCAATATC---AC-----CAATCTTGA-ATTTGCTAAA 251774 || |||| |||| ||||||| || || ||| ||| || || | || Sbjct 261279 GCC------CTGT-TCTCT-AAGCAATTTCGATACGCTCTCAACGGTGACATCTG-TGAA 261329 Query 251775 ACTGGTGCCGTCTCCGTAAAGACCCATTTGA-ATCAACACTTTGCCTAAAAGTGTCTCTT 251833 || ||||||| | | || | || ||| | ||||| | || ||| Sbjct 261330 GGGTGTCGCGTCTCCTTCAGCGCCTTTCAGAGATCCAACCTTTG-AGAGTAGGCACTCGA 261388 Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893 | || || || ||||||||| ||||||||| || ||||||||||| | || || Sbjct 261389 CTAAATGAGCAATTGTCATACGAGAGGGAATAGCGTGCGGATTGATGATCAGATCCGGGG 261448 Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT-CAATA-ATGTTTCCAATAGTTCC 251951 | || ||||| ||||||||||||||| || | | | ||| | | || ||||| || Sbjct 261449 TAAGGCCATCCCGAGTGAAGGGCATATC--TTCCATACGATAGGTAATACCGATAGTACC 261506 Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||||| || |||||| |||||||| Sbjct 261507 TTTTTGACCATGACGTGAGGCGAACTTGTCACCAAT 261542 Score = 91.5 bits (100), Expect = 4e-13 Identities = 197/295 (67%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| || | ||||||||| ||||| || || || || |||||| Sbjct 58354 TCTTCAAGAGCCTTGACCAACCTACGCTGAATGTAACCGGTCTCAGCCGTCTTCACAGCT 58413 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 ||||| || ||||| | ||||| |||| || |||||||| | |||| ||| | Sbjct 58414 GTATCGATCAGACCTTCTCGACCGGCCATTGCGTGGAAGAAGAACTCTGTGGGTGTCAAT 58473 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | ||| | |||| ||| || |||| || || |||| |||| |||||| Sbjct 58474 CCACGCAGGTATGAGTTTTCAATGAATCCTCGCGATTCTGGTGAATAGTCGTCCTTGGTG 58533 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || | | || | ||| | || || || | || ||||| ||| Sbjct 58534 AAATGAGGCAAAGTGCGATACTTGAATCCGAAAGGAATGCGTTGACCTTCAACAGCCTGT 58593 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 || || | |||||||| ||||| || || | | ||||||||||||| Sbjct 58594 TGGCCTACAAGTGAAATCATTTGCGAGATGTTCACGGTAGATCCCTTGGAGCCAG 58648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809585493225