Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq164 123 7e-23
seq111 93.3 1e-13
>seq164
Length=316633
Score = 123 bits (136), Expect = 7e-23
Identities = 326/497 (66%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 156026 TGGCTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCG 156082
|||||| ||||| || || || ||| | | | || ||||||||||| || || ||
Sbjct 150211 TGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACGTATCG 150270
Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142
||||| || ||| |||| | ||||| || || | ||||||||| || |||||||||||
Sbjct 150271 TGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTGGTTCC 150330
Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202
|| ||||| || |||| | ||| | | ||| | || || |||||||| || |
Sbjct 150331 GCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCAATACCGCCAGCAGT 150390
Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262
|| ||||| || || ||| | || | | ||||||||||| |||||| |
Sbjct 150391 CTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTATCATCCTT 150450
Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322
|| | || |||| || | ||| ||| || || || |||||||| || ||
Sbjct 150451 GATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGT 150510
Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTC 156382
|| | ||||| | || || || || ||||| || | |||||||| | |||
Sbjct 150511 CGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAGTTATATGTCTCGATCGCGGACTC 150570
Query 156383 AAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTAC 156442
|| | |||||||| | | || || | ||| ||| || |||||||| || |
Sbjct 150571 AATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGC 150630
Query 156443 AATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATC 156502
|| | |||| |||| || ||||||| ||||| || || || || ||||| | |
Sbjct 150631 AACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTG 150690
Query 156503 AAACAGAAAATCACGGT 156519
| | ||||||||||
Sbjct 150691 ATAGTTGAAATCACGGT 150707
Score = 87.8 bits (96), Expect = 5e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAAT 155641
||| ||| ||| ||| || |||||||| ||| | || | || |||| || | ||
Sbjct 149719 AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAG-CGGTGTACTCAATGAT 149777
Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701
|||| ||| ||||||||||| ||| || || || ||||||||||| || | |||
Sbjct 149778 CTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTT 149837
Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746
|| ||||||||||| || || |||||| |||| ||||| ||||
Sbjct 149838 GCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTG 149882
>seq111
Length=534957
Score = 93.3 bits (102), Expect = 1e-13
Identities = 375/576 (65%), Gaps = 26/576 (5%)
Strand=Plus/Plus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483
|| |||||||| |||| || || ||| | ||| | | || ||||| ||| ||| |
Sbjct 260980 CAGACATGGACTTTGTACGCGTCCGATACCTCAAACAATCGTTCCTTGAGGAAAGCG-GC 261038
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
||| || || | |||||||||||| || ||||| || ||||| |||||||| ||||| ||
Sbjct 261039 TGCTCCATGCGCAATCATACAATCGCGTTCCATCTCTCCGAACCGAAGACCTCCATCACG 261098
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603
||| | |||||| | ||||| | || ||| | | ||||| || || |||
Sbjct 261099 AGCACGACCCTCTACTGGCTGTCTTGTTAGAATCTGTAGTGGACCACGGGCACGAGCATG 261158
Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663
||| |||| ||||| ||| | | ||||| || ||| ||||| | ||| |
Sbjct 261159 AATCTTGTCATCCACCATGTGCCTCAAGCGCTGATAATATGTAGGACCTAAGAACACCTG 261218
Query 251664 CGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATA 251723
| | ||| || || || || | |||| ||||| ||||| ||| || |
Sbjct 261219 GGCACGCAATTTCTTGCCGGTATGTCCGTTGTACATGACTTCAAAGCCACGCTGTTGGAA 261278
Query 251724 ACCAAGTTTCTGTAGCTCTGAAGCAATATC---AC-----CAATCTTGA-ATTTGCTAAA 251774
|| |||| |||| ||||||| || || ||| ||| || || | ||
Sbjct 261279 GCC------CTGT-TCTCT-AAGCAATTTCGATACGCTCTCAACGGTGACATCTG-TGAA 261329
Query 251775 ACTGGTGCCGTCTCCGTAAAGACCCATTTGA-ATCAACACTTTGCCTAAAAGTGTCTCTT 251833
|| ||||||| | | || | || ||| | ||||| | || |||
Sbjct 261330 GGGTGTCGCGTCTCCTTCAGCGCCTTTCAGAGATCCAACCTTTG-AGAGTAGGCACTCGA 261388
Query 251834 TCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTT 251893
| || || || ||||||||| ||||||||| || ||||||||||| | || ||
Sbjct 261389 CTAAATGAGCAATTGTCATACGAGAGGGAATAGCGTGCGGATTGATGATCAGATCCGGGG 261448
Query 251894 TCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT-CAATA-ATGTTTCCAATAGTTCC 251951
| || ||||| ||||||||||||||| || | | | ||| | | || ||||| ||
Sbjct 261449 TAAGGCCATCCCGAGTGAAGGGCATATC--TTCCATACGATAGGTAATACCGATAGTACC 261506
Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| || ||||| || |||||| ||||||||
Sbjct 261507 TTTTTGACCATGACGTGAGGCGAACTTGTCACCAAT 261542
Score = 91.5 bits (100), Expect = 4e-13
Identities = 197/295 (67%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| || | ||||||||| ||||| || || || || ||||||
Sbjct 58354 TCTTCAAGAGCCTTGACCAACCTACGCTGAATGTAACCGGTCTCAGCCGTCTTCACAGCT 58413
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
||||| || ||||| | ||||| |||| || |||||||| | |||| ||| |
Sbjct 58414 GTATCGATCAGACCTTCTCGACCGGCCATTGCGTGGAAGAAGAACTCTGTGGGTGTCAAT 58473
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | ||| | |||| ||| || |||| || || |||| |||| ||||||
Sbjct 58474 CCACGCAGGTATGAGTTTTCAATGAATCCTCGCGATTCTGGTGAATAGTCGTCCTTGGTG 58533
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || |||| || | | || | ||| | || || || | || ||||| |||
Sbjct 58534 AAATGAGGCAAAGTGCGATACTTGAATCCGAAAGGAATGCGTTGACCTTCAACAGCCTGT 58593
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866
|| || | |||||||| ||||| || || | | |||||||||||||
Sbjct 58594 TGGCCTACAAGTGAAATCATTTGCGAGATGTTCACGGTAGATCCCTTGGAGCCAG 58648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471809585493225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |