Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq244 131 2e-24
seq155 127 2e-23
seq164 100 3e-15
>seq244
Length=165466
Score = 131 bits (144), Expect = 2e-24
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| ||||||||||||||| | || |||||
Sbjct 56009 GCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATG 56068
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | || || |||| | |||||| ||| | | ||||| | |
Sbjct 56069 TTCTCCATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAG 56128
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| |||||||| |||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 56129 AGCAGACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGC 56188
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || |||| |||||| || ||||| | ||| || ||||||||| ||||
Sbjct 56189 AGTGCGCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATG 56248
Query 868931 AT 868932
||
Sbjct 56249 AT 56250
Score = 102 bits (112), Expect = 1e-15
Identities = 143/196 (73%), Gaps = 11/196 (6%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | || ||| |||| ||| || ||||||||||| |||||
Sbjct 56323 ACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 56382
Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297
||||||||| ||||||| ||| || || ||| ||||| ||||| ||||||||||
Sbjct 56383 CTTGAGCCAGAAGATGGATGCA-AAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCAA 56441
Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCG 869354
|| |||| || ||| | |||||||| ||| | ||| | ||||||| | |
Sbjct 56442 AGGCGATAAGACGCGTGCCAAAGGTG--GAG----TTCTTATCCGTGATCCATCGAAGAG 56495
Query 869355 CCCAGTCGGCCTTTTT 869370
||||||||||||| ||
Sbjct 56496 CCCAGTCGGCCTTCTT 56511
Score = 95.1 bits (104), Expect = 1e-13
Identities = 172/251 (69%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || |||||| |||||||| ||| | | |||| | |||||
Sbjct 56658 GAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAACGCGCCTCGGGGACTTGT 56717
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || |||| || || ||| |||||| || ||||| ||| ||||||||
Sbjct 56718 ACTTCGCCGCTGAATCGCTCGACCAAATTCTCGTTGACAATGCCATCGGATGCGGCGAAG 56777
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809
|| || |||||||| ||| ||| |||||||||||| | | || ||||| |
Sbjct 56778 AAGGCAAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCATTCAATCGCTTGTTCCAGTCG 56837
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
| || | ||| || | |||||| || ||||||| || || || ||||| |||
Sbjct 56838 TGGAGATCTTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCTTCAGCCTTCTTG 56897
Query 869870 TACATCTCCCA 869880
||||| | |||
Sbjct 56898 TACATTTGCCA 56908
>seq155
Length=218610
Score = 127 bits (140), Expect = 2e-23
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||| |||||||||||| | || |||||| | || |||||| | || ||||||
Sbjct 79410 GCTGCCAACTATCTCGACATCAAGGCCCTCCTCGATGTAGGTTGCAAGACCGTCGCCAAC 79469
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| || || |||||||| |||||||| |||||| || |||
Sbjct 79470 ATGATCAAGGGCAAGTCCCCGGATGAGATCCGAAAGACCTTCAACATCCAGAACG 79524
>seq164
Length=316633
Score = 100 bits (110), Expect = 3e-15
Identities = 178/260 (68%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||| |||||||| || || |||| ||| |||||||||||||||| | ||| || |||||
Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|| ||||| || | | |||| ||| | ||||| | ||| | | ||
Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACC 150375
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | |||||| || | || || || || ||||| ||||| || ||
Sbjct 150376 AATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTC 150435
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| || |||| ||||| | ||| ||||| || || |||| || || |||||
Sbjct 150436 AATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCC 150495
Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324
||||||||||| || ||||
Sbjct 150496 TGCGTTGAAGAGGGTCGGCG 150515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107104322509725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |