Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq244 131 2e-24 seq155 127 2e-23 seq164 100 3e-15 >seq244 Length=165466 Score = 131 bits (144), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| ||||||||||||||| | || ||||| Sbjct 56009 GCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATG 56068 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | || || |||| | |||||| ||| | | ||||| | | Sbjct 56069 TTCTCCATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAG 56128 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| |||||||| |||||||| |||||||||||||||||| ||| |||||||||| Sbjct 56129 AGCAGACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGC 56188 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||| |||||| || ||||| | ||| || ||||||||| |||| Sbjct 56189 AGTGCGCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATG 56248 Query 868931 AT 868932 || Sbjct 56249 AT 56250 Score = 102 bits (112), Expect = 1e-15 Identities = 143/196 (73%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | || ||| |||| ||| || ||||||||||| ||||| Sbjct 56323 ACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 56382 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| || || ||| ||||| ||||| |||||||||| Sbjct 56383 CTTGAGCCAGAAGATGGATGCA-AAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCAA 56441 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCG 869354 || |||| || ||| | |||||||| ||| | ||| | ||||||| | | Sbjct 56442 AGGCGATAAGACGCGTGCCAAAGGTG--GAG----TTCTTATCCGTGATCCATCGAAGAG 56495 Query 869355 CCCAGTCGGCCTTTTT 869370 ||||||||||||| || Sbjct 56496 CCCAGTCGGCCTTCTT 56511 Score = 95.1 bits (104), Expect = 1e-13 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || |||||| |||||||| ||| | | |||| | ||||| Sbjct 56658 GAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAACGCGCCTCGGGGACTTGT 56717 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||| || || ||| |||||| || ||||| ||| |||||||| Sbjct 56718 ACTTCGCCGCTGAATCGCTCGACCAAATTCTCGTTGACAATGCCATCGGATGCGGCGAAG 56777 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGTGG 869809 || || |||||||| ||| ||| |||||||||||| | | || ||||| | Sbjct 56778 AAGGCAAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCATTCAATCGCTTGTTCCAGTCG 56837 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | || | ||| || | |||||| || ||||||| || || || ||||| ||| Sbjct 56838 TGGAGATCTTTGGAGAGATCAATCTCCTCAGCAGTCCAGAAAGAAGCTTCAGCCTTCTTG 56897 Query 869870 TACATCTCCCA 869880 ||||| | ||| Sbjct 56898 TACATTTGCCA 56908 >seq155 Length=218610 Score = 127 bits (140), Expect = 2e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||| |||||||||||| | || |||||| | || |||||| | || |||||| Sbjct 79410 GCTGCCAACTATCTCGACATCAAGGCCCTCCTCGATGTAGGTTGCAAGACCGTCGCCAAC 79469 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| || || |||||||| |||||||| |||||| || ||| Sbjct 79470 ATGATCAAGGGCAAGTCCCCGGATGAGATCCGAAAGACCTTCAACATCCAGAACG 79524 >seq164 Length=316633 Score = 100 bits (110), Expect = 3e-15 Identities = 178/260 (68%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || |||| ||| |||||||||||||||| | ||| || ||||| Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || | | |||| ||| | ||||| | ||| | | || Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACC 150375 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | |||||| || | || || || || ||||| ||||| || || Sbjct 150376 AATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTC 150435 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || || |||| ||||| | ||| ||||| || || |||| || || ||||| Sbjct 150436 AATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCC 150495 Query 1630305 GGCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| || |||| Sbjct 150496 TGCGTTGAAGAGGGTCGGCG 150515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107104322509725