Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq164 136 4e-27 seq9 131 2e-25 seq151 91.5 1e-13 >seq164 Length=316633 Score = 136 bits (150), Expect = 4e-27 Identities = 462/712 (65%), Gaps = 21/712 (3%) Strand=Plus/Plus Query 139307 ACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGT 139366 |||| | ||||||||| || || ||||| || |||| | || | || | || Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059 Query 139367 CAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAA 139426 || || | || | |||| |||||||| | | ||| ||| ||||||||| || || | Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119 Query 139427 TCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCC--ATGTTACGTTT 139484 |||| | ||| | | ||| ||||| || |||||| ||| || || | || Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179 Query 139485 CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 || |||||| | |||||||| ||||||||||| || ||||||||||| | || || Sbjct 150180 GATC--AAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACC 150237 Query 139545 TTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601 || || ||||| |||||||||| |||| ||| || ||| | ||||| | ||| Sbjct 150238 CGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCAT 150297 Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT----GGGACTGTTGCGAGCTC 139657 || ||||| | | || || ||||| | | || | | | || ||| | Sbjct 150298 GGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGT----AGCGC 150353 Query 139658 GGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGC 139717 ||| ||| ||||| | || || ||||| || ||||| || | | ||| Sbjct 150354 GGATACGATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT 150413 Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | || || || |||||| ||||| || |||| || || || ||||| || | Sbjct 150414 TCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGG 150473 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATT 139836 | | ||| ||| ||||| || || || || || || || ||||| ||| Sbjct 150474 ACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATT 150533 Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCG 139896 ||||| ||||| | | || || ||||| ||| | |||| || ||||| || || Sbjct 150534 TGTTT-GACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCT 150592 Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956 |||| || ||||| ||||| ||||| ||||| || ||| ||| | |||| | | Sbjct 150593 ACAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGC 150652 Query 139957 AG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | ||| || ||||||||| | || ||| || |||||||||||| Sbjct 150653 AGGTATGATCGT--TCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATC 150702 Score = 125 bits (138), Expect = 6e-24 Identities = 603/952 (63%), Gaps = 19/952 (2%) Strand=Plus/Plus Query 138286 ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAA 138345 ||||| | ||||| |||||||||||| || ||||||||| ||||| | | | Sbjct 148939 ATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACAATG 148998 Query 138346 TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTT 138405 || | | || ||||| ||||||||||| ||| | || | || || | Sbjct 148999 GTTCTCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTG 149058 Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465 | ||| | ||||| ||| | |||||||| || || |||||| || || Sbjct 149059 GGAATCCTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCAC 149118 Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525 ||| || | | | ||| || | ||| || |||| || || || ||||||||| Sbjct 149119 AGACCCATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCACCGGCC 149178 Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585 || || || ||| ||||||||| ||| | |||||||| | ||||||||||| ||| Sbjct 149179 AAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGA 149238 Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG- 138644 ||||||| |||| || || ||||| || || | || || || || | ||| || Sbjct 149239 ATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGC 149298 Query 138645 -AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCC 138703 ||| || | |||| | || ||||||||| | ||| |||| | ||||| Sbjct 149299 TGAGCAATGTTGG--CCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGACGTTCC 149356 Query 138704 ACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACAC 138763 |||| ||||| || || || || ||||| |||||||| | | || || Sbjct 149357 ACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGAC 149416 Query 138764 CAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAA 138823 ||| ||| | | | |||| | || ||| ||| ||| |||||| ||||| | Sbjct 149417 CAAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGA 149476 Query 138824 TCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACG 138883 |||| |||||| | ||||| | || | ||||||||||| ||| | Sbjct 149477 TCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATG 149536 Query 138884 CGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTT 138941 | || || || ||||| || || | |||| ||| || || | | ||| || || Sbjct 149537 CATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGC--G 149594 Query 138942 TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC 139001 ||| |||||| || || | ||||| |||||||||||||||| || || || ||| Sbjct 149595 TGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCAC 149654 Query 139002 CTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGT 139060 || ||| | | | | | | | ||||| ||| ||| | | | |||||||| Sbjct 149655 CTGAGT-GACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGA--- 149710 Query 139061 CGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120 || || | | || ||| | | |||||| ||||| || || || || || Sbjct 149711 ----AAGCGGGT--AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGG 149764 Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || | || || | || | ||| || ||| || || || || | || | Sbjct 149765 TGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGT 149824 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 |||| || ||||| || ||||| ||||| |||||||| || | ||||| || Sbjct 149825 TGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTC 149876 >seq9 Length=355999 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || || || || || | | Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | |||||| |||||| || |||||||| || || || || ||||| Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||||||||| || ||||| |||||| ||| ||||||| || ||| Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || ||||||||| |||| Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCG 44960 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || || || || || || || || ||||| || || | | Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| || || || || || || || ||| Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||||| |||||| ||| | || || || ||| Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || ||||||||| | || |||| || || Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720 >seq151 Length=370960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || || || |||||||| || ||||||| ||||| || Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | | || || || ||||| |||||||| || || || ||| Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || |||| || || Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGG 220873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895209919000