Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq164 136 4e-27
seq9 131 2e-25
seq151 91.5 1e-13
>seq164
Length=316633
Score = 136 bits (150), Expect = 4e-27
Identities = 462/712 (65%), Gaps = 21/712 (3%)
Strand=Plus/Plus
Query 139307 ACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGT 139366
|||| | ||||||||| || || ||||| || |||| | || | || | ||
Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059
Query 139367 CAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAA 139426
|| || | || | |||| |||||||| | | ||| ||| ||||||||| || || |
Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGA 150119
Query 139427 TCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCC--ATGTTACGTTT 139484
|||| | ||| | | ||| ||||| || |||||| ||| || || | ||
Sbjct 150120 TCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTA 150179
Query 139485 CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544
|| |||||| | |||||||| ||||||||||| || ||||||||||| | || ||
Sbjct 150180 GATC--AAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACC 150237
Query 139545 TTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601
|| || ||||| |||||||||| |||| ||| || ||| | ||||| | |||
Sbjct 150238 CGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCAT 150297
Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGAT----GGGACTGTTGCGAGCTC 139657
|| ||||| | | || || ||||| | | || | | | || ||| |
Sbjct 150298 GGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGT----AGCGC 150353
Query 139658 GGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGC 139717
||| ||| ||||| | || || ||||| || ||||| || | | |||
Sbjct 150354 GGATACGATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT 150413
Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777
| || || || |||||| ||||| || |||| || || || ||||| || |
Sbjct 150414 TCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGG 150473
Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATT 139836
| | ||| ||| ||||| || || || || || || || ||||| |||
Sbjct 150474 ACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATT 150533
Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCG 139896
||||| ||||| | | || || ||||| ||| | |||| || ||||| || ||
Sbjct 150534 TGTTT-GACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCT 150592
Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956
|||| || ||||| ||||| ||||| ||||| || ||| ||| | |||| | |
Sbjct 150593 ACAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGC 150652
Query 139957 AG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006
|| || | ||| || ||||||||| | || ||| || ||||||||||||
Sbjct 150653 AGGTATGATCGT--TCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATC 150702
Score = 125 bits (138), Expect = 6e-24
Identities = 603/952 (63%), Gaps = 19/952 (2%)
Strand=Plus/Plus
Query 138286 ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAA 138345
||||| | ||||| |||||||||||| || ||||||||| ||||| | | |
Sbjct 148939 ATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACAATG 148998
Query 138346 TTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTT 138405
|| | | || ||||| ||||||||||| ||| | || | || || |
Sbjct 148999 GTTCTCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTG 149058
Query 138406 GCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTAC 138465
| ||| | ||||| ||| | |||||||| || || |||||| || ||
Sbjct 149059 GGAATCCTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCAC 149118
Query 138466 AGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCC 138525
||| || | | | ||| || | ||| || |||| || || || |||||||||
Sbjct 149119 AGACCCATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCACCGGCC 149178
Query 138526 AATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGA 138585
|| || || ||| ||||||||| ||| | |||||||| | ||||||||||| |||
Sbjct 149179 AAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGA 149238
Query 138586 ATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG- 138644
||||||| |||| || || ||||| || || | || || || || | ||| ||
Sbjct 149239 ATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGC 149298
Query 138645 -AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCC 138703
||| || | |||| | || ||||||||| | ||| |||| | |||||
Sbjct 149299 TGAGCAATGTTGG--CCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGACGTTCC 149356
Query 138704 ACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACAC 138763
|||| ||||| || || || || ||||| |||||||| | | || ||
Sbjct 149357 ACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGAC 149416
Query 138764 CAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAA 138823
||| ||| | | | |||| | || ||| ||| ||| |||||| ||||| |
Sbjct 149417 CAAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGA 149476
Query 138824 TCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACG 138883
|||| |||||| | ||||| | || | ||||||||||| ||| |
Sbjct 149477 TCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATG 149536
Query 138884 CGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATT--TGACGCTTT 138941
| || || || ||||| || || | |||| ||| || || | | ||| || ||
Sbjct 149537 CATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGC--G 149594
Query 138942 TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC 139001
||| |||||| || || | ||||| |||||||||||||||| || || || |||
Sbjct 149595 TGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCAC 149654
Query 139002 CTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGT 139060
|| ||| | | | | | | | ||||| ||| ||| | | | ||||||||
Sbjct 149655 CTGAGT-GACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGA--- 149710
Query 139061 CGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGC 139120
|| || | | || ||| | | |||||| ||||| || || || || ||
Sbjct 149711 ----AAGCGGGT--AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGG 149764
Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180
|||| || | || || | || | ||| || ||| || || || || | || |
Sbjct 149765 TGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGT 149824
Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232
|||| || ||||| || ||||| ||||| |||||||| || | ||||| ||
Sbjct 149825 TGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTC 149876
>seq9
Length=355999
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || || || || || || || || || || | |
Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | |||||| |||||| || |||||||| || || || || |||||
Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||||||||| || ||||| |||||| ||| ||||||| || |||
Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| || || || ||||||||| ||||
Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCG 44960
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || |||| || || || || || || || || ||||| || || | |
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| ||||||||||| || || || || || || || |||
Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || || || || || ||||| |||||| ||| | || || || |||
Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || |||||||| || || ||||||||| | || |||| || ||
Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGG 44720
>seq151
Length=370960
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || || || |||||||| || ||||||| ||||| ||
Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
||||| ||||| | | | | || || || ||||| |||||||| || || || |||
Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
||||| | || |||| || ||
Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGG 220873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449895209919000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |