Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq155 131 3e-24
seq244 116 6e-20
seq164 86.0 1e-10
>seq155
Length=218610
Score = 131 bits (144), Expect = 3e-24
Identities = 98/115 (85%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| |||||||| |||||||||||| ||||||||||| | || ||||||||||| ||||||
Sbjct 79410 GCTGCCAACTATCTCGACATCAAGGCCCTCCTCGATGTAGGTTGCAAGACCGTCGCCAAC 79469
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| |||||||||||||| || || || ||||| |||||||| |||||| || |||
Sbjct 79470 ATGATCAAGGGCAAGTCCCCGGATGAGATCCGAAAGACCTTCAACATCCAGAACG 79524
>seq244
Length=165466
Score = 116 bits (128), Expect = 6e-20
Identities = 168/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| || || || ||| |||||| ||||||||||||||| | || ||||| ||||||
Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027
| || || |||| | |||| ||| | | ||||| | ||||| |||
Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAGACGG 56137
Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087
||||| || || |||||||||||||||||||||| ||| |||||||||| || ||
Sbjct 56138 TCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGCAT 56197
Query 794088 GGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
|||| |||||| |||| ||||| | ||| || ||||||||| |||||||
Sbjct 56198 GGCAAAGACTCG--GACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGAT 56250
Score = 87.8 bits (96), Expect = 3e-11
Identities = 109/148 (74%), Gaps = 6/148 (4%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | || ||| ||| ||| || ||||||||||| |||||
Sbjct 56323 ACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 56382
Query 794400 CTTGAGCCAAAAGATG---GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||||||| |||||| ||| || || || ||| ||||| ||||| ||||||||
Sbjct 56383 CTTGAGCCAGAAGATGGATGCAAAGGCACCGC---TGAAGAAGATACCCTCAACGGCGGC 56439
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTG 794484
|||| ||| || ||| | |||| |||
Sbjct 56440 AAAGGCGATAAGACGCGTGCCAAAGGTG 56467
>seq164
Length=316633
Score = 86.0 bits (94), Expect = 1e-10
Identities = 175/260 (67%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||| ||||| || || || |||| ||| |||||||||||||||| | || || |||||
Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|| ||||| || | | |||| ||| | ||||| | ||| | | ||
Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACC 150375
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | |||||| || | || || | ||||| || || ||||| || ||
Sbjct 150376 AATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTC 150435
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
|| || |||| ||||| | || ||||| || || |||| || || |||||
Sbjct 150436 AATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCC 150495
Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799
|| |||||||| || ||||
Sbjct 150496 TGCGTTGAAGAGGGTCGGCG 150515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916201190811575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |