Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq155 131 3e-24 seq244 116 6e-20 seq164 86.0 1e-10 >seq155 Length=218610 Score = 131 bits (144), Expect = 3e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||| |||||||||||| ||||||||||| | || ||||||||||| |||||| Sbjct 79410 GCTGCCAACTATCTCGACATCAAGGCCCTCCTCGATGTAGGTTGCAAGACCGTCGCCAAC 79469 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| || || || ||||| |||||||| |||||| || ||| Sbjct 79470 ATGATCAAGGGCAAGTCCCCGGATGAGATCCGAAAGACCTTCAACATCCAGAACG 79524 >seq244 Length=165466 Score = 116 bits (128), Expect = 6e-20 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| |||||| ||||||||||||||| | || ||||| |||||| Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | || || |||| | |||| ||| | | ||||| | ||||| ||| Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAGACGG 56137 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 ||||| || || |||||||||||||||||||||| ||| |||||||||| || || Sbjct 56138 TCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGCAT 56197 Query 794088 GGCAGCGACTCGCTGACA--AACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 |||| |||||| |||| ||||| | ||| || ||||||||| ||||||| Sbjct 56198 GGCAAAGACTCG--GACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGAT 56250 Score = 87.8 bits (96), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | || ||| ||| ||| || ||||||||||| ||||| Sbjct 56323 ACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 56382 Query 794400 CTTGAGCCAAAAGATG---GCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| |||||| ||| || || || ||| ||||| ||||| |||||||| Sbjct 56383 CTTGAGCCAGAAGATGGATGCAAAGGCACCGC---TGAAGAAGATACCCTCAACGGCGGC 56439 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTG 794484 |||| ||| || ||| | |||| ||| Sbjct 56440 AAAGGCGATAAGACGCGTGCCAAAGGTG 56467 >seq164 Length=316633 Score = 86.0 bits (94), Expect = 1e-10 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || |||| ||| |||||||||||||||| | || || ||||| Sbjct 150256 CTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGA 150315 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || ||||| || | | |||| ||| | ||||| | ||| | | || Sbjct 150316 GGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACC 150375 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | |||||| || | || || | ||||| || || ||||| || || Sbjct 150376 AATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTC 150435 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || || |||| ||||| | || ||||| || || |||| || || ||||| Sbjct 150436 AATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCC 150495 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 150496 TGCGTTGAAGAGGGTCGGCG 150515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916201190811575