Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq9 111 1e-19
seq382 84.2 1e-11
>seq9
Length=355999
Score = 111 bits (122), Expect = 1e-19
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| |||| |||||||| ||||| ||||| || | | |||| ||||
Sbjct 45191 AGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCC 45250
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||||||||| || |||||||||| ||| || |||||| | || | |||||||||||
Sbjct 45251 TCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 45310
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| |||||| || || || | ||||| ||| || ||||| || | ||| ||
Sbjct 45311 TGAATTTTTGACTTCAC--AT--TGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGAT 45366
Query 34942 GGTCTTTCCCGT 34953
|||||| || ||
Sbjct 45367 GGTCTTGCCGGT 45378
Score = 109 bits (120), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 12/219 (5%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||| | || |||||| || ||||| ||||| || || | || ||||
Sbjct 44962 CAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATC 45021
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||| ||||||| || ||||| || |||| | ||||| |||||
Sbjct 45022 CTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTC 45081
Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTAT-CGATTCATTGGCCTCGACATCAACGGT 34938
| || ||| ||| ||| |||| ||| |||| | |||||| |||| ||
Sbjct 45082 CTGAATCTTTGATTTTACGTTGTCGATGGTATCCGAT------GACTCGACCTCAAGAGT 45135
Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||||| || ||||| ||||| || ||||| |||||
Sbjct 45136 GATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 93.3 bits (102), Expect = 3e-14
Identities = 137/192 (71%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | ||| |||||||| ||||| ||||| || ||| |||| | ||
Sbjct 45474 AGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 45533
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||||| || || |||||| | || | |||||||||||
Sbjct 45534 TCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 45593
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||||| || || || | ||||| || || |||||| || | ||| ||
Sbjct 45594 TGGATTTTGGACTTTAC--AT--TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGAT 45649
Query 34942 GGTCTTTCCCGT 34953
||||||||||||
Sbjct 45650 GGTCTTTCCCGT 45661
>seq382
Length=167612
Score = 84.2 bits (92), Expect = 1e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || ||| |||| | || || || |||||||| || ||
Sbjct 145445 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAA 145386
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||| || || ||||||||| | || | |||||||||||
Sbjct 145385 GATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 145347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691113013075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |