Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq382 84.2 1e-11 >seq9 Length=355999 Score = 111 bits (122), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| |||||||| ||||| ||||| || | | |||| |||| Sbjct 45191 AGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCC 45250 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || |||||||||| ||| || |||||| | || | ||||||||||| Sbjct 45251 TCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 45310 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | |||||| || || || | ||||| ||| || ||||| || | ||| || Sbjct 45311 TGAATTTTTGACTTCAC--AT--TGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGAT 45366 Query 34942 GGTCTTTCCCGT 34953 |||||| || || Sbjct 45367 GGTCTTGCCGGT 45378 Score = 109 bits (120), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || |||||| || ||||| ||||| || || | || |||| Sbjct 44962 CAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATC 45021 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||||||||| ||||||| || ||||| || |||| | ||||| ||||| Sbjct 45022 CTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTC 45081 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTAT-CGATTCATTGGCCTCGACATCAACGGT 34938 | || ||| ||| ||| |||| ||| |||| | |||||| |||| || Sbjct 45082 CTGAATCTTTGATTTTACGTTGTCGATGGTATCCGAT------GACTCGACCTCAAGAGT 45135 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||| ||||| || ||||| ||||| Sbjct 45136 GATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||| ||||| ||||| || ||| |||| | || Sbjct 45474 AGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 45533 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||||| || || |||||| | || | ||||||||||| Sbjct 45534 TCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 45593 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || | ||||| || || |||||| || | ||| || Sbjct 45594 TGGATTTTGGACTTTAC--AT--TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGAT 45649 Query 34942 GGTCTTTCCCGT 34953 |||||||||||| Sbjct 45650 GGTCTTTCCCGT 45661 >seq382 Length=167612 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| | || || || |||||||| || || Sbjct 145445 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAA 145386 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||| || || ||||||||| | || | ||||||||||| Sbjct 145385 GATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 145347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691113013075