Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq244 163 3e-35 seq164 111 2e-19 seq9 109 5e-19 >seq244 Length=165466 Score = 163 bits (180), Expect = 3e-35 Identities = 350/517 (68%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || || || ||||| || ||||| || |||||| ||| || ||||| | Sbjct 56014 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTC 56073 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 |||||| || || || ||| | ||||| || | || | ||| | || |||||| Sbjct 56074 CATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAG 56133 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || |||||||||||||||| ||||||| | || || |||||||| |||| | Sbjct 56134 ACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTG-GCATTCATGCCGAGCAGTG 56192 Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 | ||||| | | | || ||||||| ||||||| || ||||| ||| ||| Sbjct 56193 CGCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGT 56252 Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGG--TAGTACAGGCACGC 120647 | ||| | ||| | |||| | ||| | | | || || ||||| || Sbjct 56253 CTTGCACA-----GCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGGCAGGC 56307 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 |||||| ||||||| |||||||| || || || ||||| ||| || || || || || Sbjct 56308 AAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGG 56367 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 ||||| ||| | |||||| |||| |||| |||||| || ||||| | || Sbjct 56368 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACC 56427 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTT-GCTGTCGATCC 120826 ||| ||| ||||||||||| | ||| | | || || | |||| | || ||||| Sbjct 56428 CTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGT-GATCC 56486 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | | ||||| |||||||| ||||| | ||| || Sbjct 56487 ATCGAAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 56523 >seq164 Length=316633 Score = 111 bits (122), Expect = 2e-19 Identities = 589/929 (63%), Gaps = 30/929 (3%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 || ||| ||| || ||||| || || || ||||| ||||||| ||||| || || | Sbjct 148948 GATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACAATGGTTCTCTGT 149007 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 || ||||| | |||||||| || |||||| | ||| || ||| | || Sbjct 149008 GAA---ATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTGGGAATC 149064 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 | ||| | || |||| | |||| || | || ||| | ||||| | || Sbjct 149065 CTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCC 149124 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | || | ||||| | | ||| | |||| || || || ||||| ||||| | || Sbjct 149125 ATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCACCGGCCAAGACA 149184 Query 148290 CGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| || | ||| ||| | || ||||| |||||||||| || | |||||| Sbjct 149185 CGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTG 149243 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | ||| | ||||| ||||| || || || |||||||| |||| ||| | | Sbjct 149244 AGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGC 149303 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || ||| ||||| | |||||||||| || | || || |||||||||||||| Sbjct 149304 AATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGACGTTCCACATGTC 149363 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 ||| |||| || || || |||| || ||||| | | || || || || | Sbjct 149364 GTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACCAAGCTC 149423 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | | | |||||| || ||| || | | |||||| || || || || | Sbjct 149424 CTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGATCTGAGT 149483 Query 148589 GTTGAGCAGCGCCGCCGACTCG-CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||||| | ||| || | || | ||||| || || | || || || | Sbjct 149484 GTTGAGCTTCCTAGCC-TCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGCATCAG 149542 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC- 148706 | || || || || || | ||| || || ||||| | | ||| | |||| || ||| Sbjct 149543 CGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGC-CTCT 149601 Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766 |||| || ||||| || |||||||| |||| || ||||| | ||||| || Sbjct 149602 TCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTGAGTG 149661 Query 148767 ATTCTGCGCAGCAATTCAAAATCGTACTTGTCA---------TCTACGATGCATCGGTTC 148817 | | | ||| | ||||| || | | || || |||| | ||| | Sbjct 149662 ACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGA--AAGCGGGT- 149718 Query 148818 ACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877 | || | |||| | | ||||| || || |||||| || ||| ||||||| | |||| Sbjct 149719 AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGATC 149778 Query 148878 TCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || | ||| || || |||| ||| |||| |||||| || |||||||||| | Sbjct 149779 TCAGTGCAGAGGTTAGAACTGC---GGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGG 149835 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| || |||||||| ||||| || || Sbjct 149836 TTGCATGCATCCTTGTAGAGCATATATGG 149864 >seq9 Length=355999 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || ||||| ||| | ||| | | | ||||| || Sbjct 44741 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCA-TCCTCAAG 44799 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| ||||||| ||||| ||||| || ||||| || ||||| || ||| Sbjct 44800 CTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGAT 44859 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | || | ||||| | | ||| || |||| |||| || ||||| Sbjct 44860 CTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCC 44919 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || |||||||||||||| Sbjct 44920 AGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 89.7 bits (98), Expect = 5e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||||| || ||||| || ||||| ||| || ||| ||| ||| ||||||| Sbjct 45482 ATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACC-GTCTTCGAGCT 45540 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | ||||| ||||| || || ||||| |||||||| ||| | Sbjct 45541 GCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTT 45600 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||||| || ||| || || | ||||| ||| || || | Sbjct 45601 TGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTTCCCG 45660 Query 133636 T 133636 | Sbjct 45661 T 45661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418231827000