Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq244 163 3e-35
seq164 111 2e-19
seq9 109 5e-19
>seq244
Length=165466
Score = 163 bits (180), Expect = 3e-35
Identities = 350/517 (68%), Gaps = 11/517 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || || || || ||||| || ||||| || |||||| ||| || ||||| |
Sbjct 56014 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTC 56073
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
|||||| || || || ||| | ||||| || | || | ||| | || ||||||
Sbjct 56074 CATAAAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGCCGAGGGCTAAGAGCAG 56133
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || |||||||||||||||| ||||||| | || || |||||||| |||| |
Sbjct 56134 ACGGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTG-GCATTCATGCCGAGCAGTG 56192
Query 120530 CCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589
| ||||| | | | || ||||||| ||||||| || ||||| ||| |||
Sbjct 56193 CGCATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGT 56252
Query 120590 CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGG--TAGTACAGGCACGC 120647
| ||| | ||| | |||| | ||| | | | || || ||||| ||
Sbjct 56253 CTTGCACA-----GCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGGCAGGC 56307
Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707
|||||| ||||||| |||||||| || || || ||||| ||| || || || || ||
Sbjct 56308 AAAGTCAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGG 56367
Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767
||||| ||| | |||||| |||| |||| |||||| || ||||| | ||
Sbjct 56368 CATGAGGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACC 56427
Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTT-GCTGTCGATCC 120826
||| ||| ||||||||||| | ||| | | || || | |||| | || |||||
Sbjct 56428 CTCAACGGCGGCAAAGGCGATAAGACGCGTGCCAAAGGTGGAGTTCTTATCCGT-GATCC 56486
Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
| | ||||| |||||||| ||||| | ||| ||
Sbjct 56487 ATCGAAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGG 56523
>seq164
Length=316633
Score = 111 bits (122), Expect = 2e-19
Identities = 589/929 (63%), Gaps = 30/929 (3%)
Strand=Plus/Plus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109
|| ||| ||| || ||||| || || || ||||| ||||||| ||||| || || |
Sbjct 148948 GATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGACAATGGTTCTCTGT 149007
Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169
|| ||||| | |||||||| || |||||| | ||| || ||| | ||
Sbjct 149008 GAA---ATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTGGGAATC 149064
Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229
| ||| | || |||| | |||| || | || ||| | ||||| | ||
Sbjct 149065 CTCTGAATAGAACCGCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCC 149124
Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
| || | ||||| | | ||| | |||| || || || ||||| ||||| | ||
Sbjct 149125 ATATCTACAAGGTCCTTCAACAGCCATGGATTTACAACTTGGAACTCACCGGCCAAGACA 149184
Query 148290 CGCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| || ||| || | ||| ||| | || ||||| |||||||||| || | ||||||
Sbjct 149185 CGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTG 149243
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| ||| | ||||| ||||| || || || |||||||| |||| ||| | |
Sbjct 149244 AGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGC 149303
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468
|| ||| ||||| | |||||||||| || | || || ||||||||||||||
Sbjct 149304 AATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAGGGGTGACGTTCCACATGTC 149363
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
||| |||| || || || |||| || ||||| | | || || || || |
Sbjct 149364 GTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACCAAGCTC 149423
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| | | |||||| || ||| || | | |||||| || || || || |
Sbjct 149424 CTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGATCTGAGT 149483
Query 148589 GTTGAGCAGCGCCGCCGACTCG-CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647
||||||| | ||| || | || | ||||| || || | || || || |
Sbjct 149484 GTTGAGCTTCCTAGCC-TCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGCATCAG 149542
Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC- 148706
| || || || || || | ||| || || ||||| | | ||| | |||| || |||
Sbjct 149543 CGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGC-CTCT 149601
Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766
|||| || ||||| || |||||||| |||| || ||||| | ||||| ||
Sbjct 149602 TCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTGAGTG 149661
Query 148767 ATTCTGCGCAGCAATTCAAAATCGTACTTGTCA---------TCTACGATGCATCGGTTC 148817
| | | ||| | ||||| || | | || || |||| | ||| |
Sbjct 149662 ACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGA--AAGCGGGT- 149718
Query 148818 ACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877
| || | |||| | | ||||| || || |||||| || ||| ||||||| | ||||
Sbjct 149719 AGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGATC 149778
Query 148878 TCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934
|| | ||| || || |||| ||| |||| |||||| || |||||||||| |
Sbjct 149779 TCAGTGCAGAGGTTAGAACTGC---GGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGG 149835
Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||| || |||||||| ||||| || ||
Sbjct 149836 TTGCATGCATCCTTGTAGAGCATATATGG 149864
>seq9
Length=355999
Score = 109 bits (120), Expect = 5e-19
Identities = 150/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| || || ||||| || ||||| ||| | ||| | | | ||||| ||
Sbjct 44741 AAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCA-TCCTCAAG 44799
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||| || ||| ||||||| ||||| ||||| || ||||| || ||||| || |||
Sbjct 44800 CTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGAT 44859
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| |||| | || | ||||| | | ||| || |||| |||| || |||||
Sbjct 44860 CTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGCC 44919
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||||| || ||||||||||||||
Sbjct 44920 AGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 89.7 bits (98), Expect = 5e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||||| ||||| || ||||| || ||||| ||| || ||| ||| ||| |||||||
Sbjct 45482 ATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACC-GTCTTCGAGCT 45540
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | ||||| ||||| || || ||||| |||||||| ||| |
Sbjct 45541 GCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTT 45600
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | || | ||||||| || ||| || || | ||||| ||| || || |
Sbjct 45601 TGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTTCCCG 45660
Query 133636 T 133636
|
Sbjct 45661 T 45661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483418231827000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |