Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq164 150 4e-31 >seq164 Length=316633 Score = 150 bits (166), Expect = 4e-31 Identities = 446/681 (65%), Gaps = 9/681 (1%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAA 110366 || |||||||| || |||||||| | || | || | |||||||| || | |||| Sbjct 150684 TTCGGTTTCAAGACCCTTGAACGATCATACCTGCTCAGAATCAATGGCAAGGTTGCTGAA 150625 Query 110367 CGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCT 110426 ||||||||||||||| || | ||||| || | || ||||| || | || ||| | | Sbjct 150624 CGTCCTCAACACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCC 150565 Query 110427 GTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT--ATTCATGCTACTCCTACCC 110484 | || || ||| | || | || ||| || || | ||||| | || |||| Sbjct 150564 GCGATCGAGACATATAAC-TAC-ATGTCAAACAAATACTTCACACATGCCTCGCCGACCC 150507 Query 110485 TATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACG 110544 | || |||||||| || | |||| || | |||||||| || | | || || | Sbjct 150506 TCTTCAACGCAGGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGG 150447 Query 110545 ATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 ||||| ||||||||||| ||||| | || || ||| | ||||| || | Sbjct 150446 ATGATAGCATTGAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTG 150387 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 |||| || |||||| | | || ||| ||| ||| | | || | |||| | | Sbjct 150386 CTGGCGGTATTGGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAA 150327 Query 110665 CGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAAT 110724 | || ||| | || | ||| || | || ||| | | |||| |||| |||||||| || Sbjct 150326 CCAATGGTACCTCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGAT 150267 Query 110725 ATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGC 110781 | || |||| ||||| |||| | || | || || ||||||||||| || |||| Sbjct 150266 ACGTCGATCAGGGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGC 150207 Query 110782 ATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAG 110841 | | || | || | ||| | || || | |||||||| || ||||| | | Sbjct 150206 ACGCCGACGTTTTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGGTCCGTG 150147 Query 110842 CACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAA 110901 | || || || || || ||| | ||||| | || || |||||||| ||||| ||||| | Sbjct 150146 CTCGCGACTTGTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGA 150087 Query 110902 ATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGA 110960 | ||| ||| |||| | || || || || ||||||| || | || || ||||| Sbjct 150086 ACGGCGAATGGACTCTGTTCTG-CCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGT 150028 Query 110961 AAAGAGTTTGAAGACCTTTAC 110981 | |||||||| || || ||| Sbjct 150027 GATGAGTTTGAGGAACTCTAC 150007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806337433425