Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq244 95.1 1e-14 seq164 95.1 1e-14 seq9 86.0 6e-12 >seq244 Length=165466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105 ||||| || | ||| || ||||||| || | | | | |||| ||| |||| ||| Sbjct 56241 GAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGC 56182 Query 47106 ATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 ||||| || || || |||||| | || ||||||||||| || || |||||| | | Sbjct 56181 ATGAATGC-CACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGC 56123 Query 47165 GCTCGG--ACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATT 47222 ||||| ||||| || | | || ||| ||||| ||||| |||||| | ||||| Sbjct 56122 CCTCGGCAACAAC--AAGTTCTACAACGCTACCAATCCCTTTGACTTTATGGAGAACATC 56065 Query 47223 TCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || || | |||||| ||||| || |||||||| || || || || || Sbjct 56064 TCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 56018 >seq164 Length=316633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 202/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 ||||| || || ||||| || | |||| | | | | || || || ||||||| || Sbjct 150425 TAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGT 150484 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCA 148228 | | || || || ||| ||||| || || || || || |||| ||||| | Sbjct 150485 GACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGAC--A 150542 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 | | ||| ||||| || ||| || ||||| |||||||||||||| | || || | Sbjct 150543 TGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACAC 150602 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT 148348 |||| |||||||| || || ||||| ||||| | ||||| |||| || ||| Sbjct 150603 GCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATC 150662 Query 148349 TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| ||||| ||| |||| ||| ||| || | ||||| | || || ||||||||| Sbjct 150663 GTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACACGATGGCCG 150722 >seq9 Length=355999 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | ||||||| ||||| ||||||||||| || || || | Sbjct 44960 CGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCA 45019 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || |||| | |||| | |||||| ||||| || || || || ||||| Sbjct 45020 TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTG 45079 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| ||| | | || | ||||| | | ||| || || | || | Sbjct 45080 TCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATG 45139 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || || | ||| || ||||| Sbjct 45140 GTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608668003000