Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq244 95.1 1e-14
seq164 95.1 1e-14
seq9 86.0 6e-12
>seq244
Length=165466
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 47046 GAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGC 47105
||||| || | ||| || ||||||| || | | | | |||| ||| |||| |||
Sbjct 56241 GAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTGCCATGCGCACTGCTCGGC 56182
Query 47106 ATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164
||||| || || || |||||| | || ||||||||||| || || |||||| | |
Sbjct 56181 ATGAATGC-CACCCTCATGTGCCAGTACATTGAGTTTGTTGCCGACCGTCTGCTCTTAGC 56123
Query 47165 GCTCGG--ACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATT 47222
||||| ||||| || | | || ||| ||||| ||||| |||||| | |||||
Sbjct 56122 CCTCGGCAACAAC--AAGTTCTACAACGCTACCAATCCCTTTGACTTTATGGAGAACATC 56065
Query 47223 TCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
|| || | |||||| ||||| || |||||||| || || || || ||
Sbjct 56064 TCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 56018
>seq164
Length=316633
Score = 95.1 bits (104), Expect = 1e-14
Identities = 202/300 (67%), Gaps = 4/300 (1%)
Strand=Plus/Plus
Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170
||||| || || ||||| || | |||| | | | | || || || ||||||| ||
Sbjct 150425 TAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGT 150484
Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCA 148228
| | || || || ||| ||||| || || || || || |||| ||||| |
Sbjct 150485 GACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGAC--A 150542
Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288
| | ||| ||||| || ||| || ||||| |||||||||||||| | || || |
Sbjct 150543 TGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACAC 150602
Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT 148348
|||| |||||||| || || ||||| ||||| | ||||| |||| || |||
Sbjct 150603 GCATAAGCATGTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATC 150662
Query 148349 TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
||| ||||| ||| |||| ||| ||| || | ||||| | || || |||||||||
Sbjct 150663 GTTCAAGGGTCTTGAAACCGAAGAACTGATAGTTGAAATCACGGTCATACACGATGGCCG 150722
>seq9
Length=355999
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| ||||| || | ||||||| ||||| ||||||||||| || || || |
Sbjct 44960 CGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCA 45019
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| |||||||| || |||| | |||| | |||||| ||||| || || || || |||||
Sbjct 45020 TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTG 45079
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| ||| ||| | | || | ||||| | | ||| || || | || |
Sbjct 45080 TCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATG 45139
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || ||||| || || || | ||| || |||||
Sbjct 45140 GTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476608668003000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |