Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq244 131 2e-24 seq164 86.0 9e-11 >seq244 Length=165466 Score = 131 bits (144), Expect = 2e-24 Identities = 209/296 (71%), Gaps = 13/296 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| || || || || ||||| || |||||| | || | Sbjct 56912 GATTTGGCAAATGTAC-AAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATC 56854 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| || ||| |||||||||||| ||| Sbjct 56853 TCTCCAAAGATCTCCACG----ACTGGAACAAGCGATTGAATGACGACGAGCGCTTCTTC 56798 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||| ||||| || |||||| ||||||||| || |||||| ||| Sbjct 56797 ATCTCCCACGTCCTTGCCTTCTT-CGCCGCATCCGATGGCATTGTCAACGAGAATTTGGT 56739 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | || || ||| | || ||||| |||| || ||||| || ||||| Sbjct 56738 CGAGCGATTCAGCGGCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGAT 56679 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 | || || |||||||||||||| || |||||||| || |||||||| ||| ||| Sbjct 56678 CATGATGGAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACATACATCA 56623 Score = 116 bits (128), Expect = 5e-20 Identities = 182/253 (72%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTT--TGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||| ||||||||| || ||| | ||||| |||| |||||| |||| | Sbjct 56250 ATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGTC--CGAGTCTTTGCCATGCG 56193 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | || |||||||||| |||||| |||||||||||||||||||| ||| || |||||||| Sbjct 56192 CACTGCTCGGCATGAATGCCACC-CTCATGTGCCAGTACATTGAGTTT-GTTGCCGACCG 56135 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| || |||||| | | ||| |||| | |||| || || | | Sbjct 56134 TCTGCTCTTAGCCCTCGGCAACA-ACAAGTTCTACAACGCTACCAATCCCTTTGACTTTA 56076 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| ||||| || | ||||||||||||||| |||||| || | ||| || ||| Sbjct 56075 TGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACC 56016 Query 1456760 CCAAGGCCGGCGT 1456772 |||||||| || Sbjct 56015 AGAAGGCCGGTGT 56003 >seq164 Length=316633 Score = 86.0 bits (94), Expect = 9e-11 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| || ||||| || || ||||| ||| || || | || || ||||| || | | Sbjct 150515 CGCCGACCCTCTTCAACGCAGGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCG 150456 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 |||| |||| ||| || || || ||||||||||| || ||| || || | || | Sbjct 150455 ACATCAAGGATGATAGCATTGAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTT 150396 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | || ||||| || ||| | | || | ||||| | ||| |||| Sbjct 150395 CCAAGACTGCTGGCGGTATTGGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATA 150336 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | | || ||||| || ||||| || || | |||||||| ||||| | ||| ||| Sbjct 150335 TTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACA 150276 Query 260163 CGGCGCGCTACGTCGACCAG 260182 | || || |||||||| ||| Sbjct 150275 CTGCACGATACGTCGATCAG 150256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177770207968850