Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-26 seq164 107 2e-18 seq151 82.4 8e-11 >seq9 Length=355999 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||| ||| | ||| || || || |||||||| ||||||||||| | | Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | | | || |||||||| || || ||||| ||||||||||||||||| ||||| Sbjct 45008 AGAGTTCGGCCA-TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGG 45066 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || ||||| ||| ||| || ||| | || || || || || || Sbjct 45067 GATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || || ||||| |||||||| Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| ||||| ||||||||||| || |||||||||||| | |||| || ||| ||| Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| |||||||| || ||||| ||||| || || || || ||||| || || || || Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | |||||||| || || || || | || ||||| || Sbjct 45597 ATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTT 45656 Query 134685 CCGGT 134689 || || Sbjct 45657 CCCGT 45661 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| || | || || | ||| | ||| || || |||||||| || ||||||||||| Sbjct 44716 CTGTCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTC 44775 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | || | || || ||||| || || || ||||| | |||||| || || || Sbjct 44776 GGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGG 44835 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || || || || || ||||| || || |||||| ||| | ||||| || || || Sbjct 44836 TGGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTC 44895 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || || || || || | ||| ||||||||||| ||||| Sbjct 44896 AACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || ||||||||||| || |||||||||||| | |||| | || || Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCC 45253 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || || ||||| ||||| || || || || ||||| || || || ||| Sbjct 45254 AGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGA 45313 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 |||||| || || ||| | || || || ||||| || ||||| || ||||| || Sbjct 45314 ATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTTG 45373 Query 134685 CCGGT 134689 ||||| Sbjct 45374 CCGGT 45378 >seq164 Length=316633 Score = 107 bits (118), Expect = 2e-18 Identities = 307/467 (66%), Gaps = 5/467 (1%) Strand=Plus/Minus Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584 ||| || | | |||||| ||| | || ||||| |||||||||||| |||| || Sbjct 150657 TACCTGCTCAGAATCAATGGCAAGGTTGCTGAACGTCCTCAACACATGCTTATGCGTGTA 150598 Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644 || || ||||||||||||||||||||||| |||| | || || || | ||||| Sbjct 150597 GCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGACATATAACTACATGTCA 150538 Query 7645 TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAA 7704 ||| | || || || || ||||| ||| | || ||| ||||| | || ||| Sbjct 150537 AACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAGGCACCCCGTCACCACAA 150478 Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764 ||||||| || || | | ||| || || ||||| || || || || |||| Sbjct 150477 ATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATGACACC 150418 Query 7765 CTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGA 7823 ||| ||| |||| |||||| || || || ||||| || |||||||| || | Sbjct 150417 CTGAAGACTTGTGCCATGATTTCC-AAGACTGCTGGCGGTATTGGTCTGAATGTGCATCG 150359 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | ||||| | || | || | ||||| || | ||| ||| | || Sbjct 150358 TATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCC 150299 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGG-GGGA--AAGCGCAA 7940 |||| | ||||| | ||| ||| | | ||| | || || ||||| |||| ||||| Sbjct 150298 CATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAGGGTGGGAATAAGCGTCC 150239 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACG 7987 || ||| ||||||||| | ||||| |||||||| ||| ||| || Sbjct 150238 GGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTTTCG 150192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 8752 GGAATATTGCAATACGACATGTGGAATGTCACGCCCACC--TCTTTGTGGAATTGGAGCG 8809 || || |||||||||||||||||||| ||||| || || |||||| ||| | ||| Sbjct 149378 GGTATCTTGCAATACGACATGTGGAACGTCACCCCTACTGATCTTTG-GGACTGGGATTC 149320 Query 8810 ATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGC 8869 ||| ||| ||| |||||||| ||| |||| || ||||| | || || |||| Sbjct 149319 ATT-GAAGGCCAACATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGC 149261 Query 8870 CCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACA 8929 | || || | || |||| || | ||||||||||| | ||||||||| | ||| | Sbjct 149260 CAACGGCTTCCACCTCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAA 149201 Query 8930 ACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 || | ||| | || || |||||||| || || Sbjct 149200 ACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTT 149167 >seq151 Length=370960 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| |||||||||||| | ||| | ||| |||||||| Sbjct 220896 GTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 220955 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| ||||| ||||| || || ||||| || || ||||| || || Sbjct 220956 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTT 221015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395715071000