Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq9 134 1e-26
seq164 107 2e-18
seq151 82.4 8e-11
>seq9
Length=355999
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| || | ||| |||| ||| | ||| || || || |||||||| ||||||||||| | |
Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| | | | | || |||||||| || || ||||| ||||||||||||||||| |||||
Sbjct 45008 AGAGTTCGGCCA-TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGG 45066
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || ||||| || ||||| ||| ||| || ||| | || || || || || ||
Sbjct 45067 GATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| ||||| || || || | || || ||||| ||||||||
Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| ||||| ||||||||||| || |||||||||||| | |||| || ||| |||
Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| |||||||| || ||||| ||||| || || || || ||||| || || || ||
Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
||||| || || ||| | |||||||| || || || || | || ||||| ||
Sbjct 45597 ATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCTTT 45656
Query 134685 CCGGT 134689
|| ||
Sbjct 45657 CCCGT 45661
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542
|| ||| || | || || | ||| | ||| || || |||||||| || |||||||||||
Sbjct 44716 CTGTCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTC 44775
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
| | || | || || ||||| || || || ||||| | |||||| || || ||
Sbjct 44776 GGAGAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGG 44835
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
|| || || || || ||||| || || |||||| ||| | ||||| || || ||
Sbjct 44836 TGGGATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTC 44895
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| |||||||| || || || || || | ||| ||||||||||| |||||
Sbjct 44896 AACCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| || || || ||||||||||| || |||||||||||| | |||| | || ||
Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCC 45253
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || || || ||||| ||||| || || || || ||||| || || || |||
Sbjct 45254 AGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGA 45313
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|||||| || || ||| | || || || ||||| || ||||| || ||||| ||
Sbjct 45314 ATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTTG 45373
Query 134685 CCGGT 134689
|||||
Sbjct 45374 CCGGT 45378
>seq164
Length=316633
Score = 107 bits (118), Expect = 2e-18
Identities = 307/467 (66%), Gaps = 5/467 (1%)
Strand=Plus/Minus
Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584
||| || | | |||||| ||| | || ||||| |||||||||||| |||| ||
Sbjct 150657 TACCTGCTCAGAATCAATGGCAAGGTTGCTGAACGTCCTCAACACATGCTTATGCGTGTA 150598
Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644
|| || ||||||||||||||||||||||| |||| | || || || | |||||
Sbjct 150597 GCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGACATATAACTACATGTCA 150538
Query 7645 TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAA 7704
||| | || || || || ||||| ||| | || ||| ||||| | || |||
Sbjct 150537 AACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAGGCACCCCGTCACCACAA 150478
Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764
||||||| || || | | ||| || || ||||| || || || || ||||
Sbjct 150477 ATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATGACACC 150418
Query 7765 CTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACGA 7823
||| ||| |||| |||||| || || || ||||| || |||||||| || |
Sbjct 150417 CTGAAGACTTGTGCCATGATTTCC-AAGACTGCTGGCGGTATTGGTCTGAATGTGCATCG 150359
Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883
| ||||| | || | || | ||||| || | ||| ||| | ||
Sbjct 150358 TATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCC 150299
Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGG-GGGA--AAGCGCAA 7940
|||| | ||||| | ||| ||| | | ||| | || || ||||| |||| |||||
Sbjct 150298 CATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAGGGTGGGAATAAGCGTCC 150239
Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACG 7987
|| ||| ||||||||| | ||||| |||||||| ||| ||| ||
Sbjct 150238 GGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTTTCG 150192
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 8752 GGAATATTGCAATACGACATGTGGAATGTCACGCCCACC--TCTTTGTGGAATTGGAGCG 8809
|| || |||||||||||||||||||| ||||| || || |||||| ||| | |||
Sbjct 149378 GGTATCTTGCAATACGACATGTGGAACGTCACCCCTACTGATCTTTG-GGACTGGGATTC 149320
Query 8810 ATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGC 8869
||| ||| ||| |||||||| ||| |||| || ||||| | || || ||||
Sbjct 149319 ATT-GAAGGCCAACATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGC 149261
Query 8870 CCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACA 8929
| || || | || |||| || | ||||||||||| | ||||||||| | ||| |
Sbjct 149260 CAACGGCTTCCACCTCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAA 149201
Query 8930 ACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963
|| | ||| | || || |||||||| || ||
Sbjct 149200 ACATTTACTCTCGCCGTGTCTTGGCCGGTGAGTT 149167
>seq151
Length=370960
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || || || |||||||| |||||||||||| | ||| | ||| ||||||||
Sbjct 220896 GTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 220955
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || |||| ||||| ||||| || || ||||| || || ||||| || ||
Sbjct 220956 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCTTGGATCTT 221015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505395715071000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |