Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq164 178 2e-39 >seq164 Length=316633 Score = 178 bits (196), Expect = 2e-39 Identities = 506/763 (66%), Gaps = 16/763 (2%) Strand=Plus/Plus Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| || || |||||| | ||||| || || | | || || | |||||||| Sbjct 150155 TCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGC 150214 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 || ||||| || || | | | ||||| || ||||| || |||||||| | ||||| ||| Sbjct 150215 TCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACGTATCGTGCA 150274 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| || ||||| | ||||| || || | |||||| || ||||||| ||||| | Sbjct 150275 GTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCA 150334 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 ||||| || | ||||| ||| | | | ||||| || || || || | || Sbjct 150335 ATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCAATACCGCCAGCAGTCTTG 150394 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 || || | |||||| |||| |||||||| ||||| || ||||||||||| | ||| Sbjct 150395 GAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATG 150454 Query 69955 TTAAGAAGAAAACAGCTAGACATTTGATGATG-TATAGTTCCCGCATTAAATAATGTAGG 70013 | | || || || |||||||| || || || || || || || | || || Sbjct 150455 TCGATGAGGAAGCAAGAGGACATTTG-TGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGG 150513 Query 70014 AGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTATGTTTCAATAGCTGATTCTA 70072 || || || ||||| |||| | || | | || || ||||| || || || || || | Sbjct 150514 CGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATATGTCTCGATCGCGGACTCAA 150572 Query 70073 TATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACC 70131 | || | | | ||||| |||| || |||||||| | ||| || ||||| ||||| | Sbjct 150573 TGTCTTCGCCG-TGAATGCCTACAGCTACACGCATAAGCATGTGTTGAGGACGTTCAGCA 150631 Query 70132 GTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT-TTTAAACCCAA-AATAGT 70189 || ||| ||| | | |||||||||| ||| || || || ||||| || || | Sbjct 150632 ACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCTTGAAACCGAAGAACTGA 150691 Query 70190 TGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAA 70249 | ||||| || | || || | || | || ||||| | ||| | ||| | Sbjct 150692 TAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGATCATCTGCGTGTTTCTGCA 150749 Query 70250 CTATATCCATAACAGTAGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGATTAACAT 70309 | |||||||| || || || || || || |||| || || || || |||| Sbjct 150750 CAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTGTGGTTCTTGGGGTTGACAT 150809 Query 70310 AGTTGAATAAATCTTCCATTACATCA--CTA-AATAGtttttttGTTTCCTTGTGTAAAT 70366 ||||| | | | ||| |||| || | | ||| | || || || | ||||||| | Sbjct 150810 AGTTGTAGAGA---TCCGATACAACAGCCGAGAATTGCTTCTTGGTCTGTTTGTGTAGGT 150866 Query 70367 TTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATG 70409 | || | ||| || | || || || ||||||||||||||||| Sbjct 150867 TCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGATG 150909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905150797000