Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq382 86.0 5e-12 >seq382 Length=167612 Score = 86.0 bits (94), Expect = 5e-12 Identities = 235/356 (66%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 ||||| || || | | || || || || ||||| ||||||||||| | || || Sbjct 127950 AATGGCCCGGAGGTGCTCAACAAGTACGTCGGTCAGTCGGAAGAAAACATTCGCAAAATG 127891 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 ||||| ||||| || ||||| | || | |||| | | | ||| |||||||||| Sbjct 127890 TTTGCAGACGCCGAGAAAGAA-TACAAGGAGAAGGGTGACGAGAGTGGACTGCACATTAT 127832 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG---GTTCT---GGTGTAAATGG 19613 || | || || |||||||| | || |||||| ||| || || |||| | ||| Sbjct 127831 TATCTTTGACGAGTTGGACGCTGTATGCAAGCAACGAGGCAGTACTGGCGGTGGGACTGG 127772 Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 ||| |||| || ||||| || || || || || | || |||||| | || || || Sbjct 127771 CGTAGGAGACAGCGTCGTCAACCAGCTTCTTTCCAAGCTTGATGGTGTTGATCAGCTAAA 127712 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACG 19733 || ||| || | || || |||||||| || |||| | || || || || | || Sbjct 127711 CAACATTCTATTGATCGGTATGACTAACCGAATGGACATGATCGATGAGGCTCTACTCCG 127652 Query 19734 ACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTG 19789 | | ||||| || ||| | | || || ||| | | || ||||| ||| |||| Sbjct 127651 AGCAGGTCGTTTAGAAGTCCACATGGAGATTTCCCTCCCAGATGAGCATGGGCGTG 127596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453941302125