Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq164 120 3e-22 seq9 109 5e-19 seq151 84.2 2e-11 >seq164 Length=316633 Score = 120 bits (132), Expect = 3e-22 Identities = 292/435 (67%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 |||| |||| || | || | ||| ||||||||| || || |||||||| ||||| || Sbjct 150055 TTCGTTGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTC 150114 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttt 131727 || | ||||| ||||| |||| || | ||| |||||| |||| || ||||| Sbjct 150115 GGGGATCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACC-ATGATTTT 150173 Query 131728 tt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTG 131786 | | | || | ||| | |||| ||| || ||||| || || | ||| | || | | Sbjct 150174 TCCTTAGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGG 150233 Query 131787 CGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCA 131843 | || |||||| || || |||| || | || | |||||||||| ||||| | Sbjct 150234 CACCCGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGA 150293 Query 131844 ACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903 |||||| | ||| |||| | | |||||||| | ||| ||| |||| | || | Sbjct 150294 GCATGGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGC 150353 Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962 ||| || || || || |||||||| || || || || || || | || || | Sbjct 150354 GGATACGATGCACATTCAGACCAATACCGCCAGCAGTCTTG-GAAATCATGGCACAAGTC 150412 Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAG 132022 | || |||| |||||||||||| | ||| || | ||||||| | ||||||||| Sbjct 150413 TTCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAG 150472 Query 132023 GACAACTGTTGGTGA 132037 |||| || |||||| Sbjct 150473 GACATTTG-TGGTGA 150486 >seq9 Length=355999 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| ||||| ||| |||||||||||||||| || || || Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| |||||| ||| | | | || | ||||||| | ||||| Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| |||||||| || || || || |||||| Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCATA 44947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||||| || | || || || ||||| || |||||||| || | || | Sbjct 44960 CGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCA 45019 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || ||||| | || | |||||| ||||||||||| | ||||||||| Sbjct 45020 TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTG 45079 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| ||| | | | || | || || | | || || || ||||| || Sbjct 45080 TCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATG 45139 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| || || || || || |||||||||||| Sbjct 45140 GTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCATA 45175 >seq151 Length=370960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||||| || ||||| || ||||||||| Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | || || |||||||||||||| || Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992 Query 27141 ACACCCTCTTTATCGGCGATCTTG 27164 | ||||| || || ||||||| Sbjct 220993 ATGCCCTCCTTGTCTTGGATCTTG 221016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932198972600