Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq164 120 3e-22
seq9 109 5e-19
seq151 84.2 2e-11
>seq164
Length=316633
Score = 120 bits (132), Expect = 3e-22
Identities = 292/435 (67%), Gaps = 8/435 (2%)
Strand=Plus/Plus
Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667
|||| |||| || | || | ||| ||||||||| || || |||||||| ||||| ||
Sbjct 150055 TTCGTTGGGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTC 150114
Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttt 131727
|| | ||||| ||||| |||| || | ||| |||||| |||| || |||||
Sbjct 150115 GGGGATCCATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACC-ATGATTTT 150173
Query 131728 tt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTG 131786
| | | || | ||| | |||| ||| || ||||| || || | ||| | || | |
Sbjct 150174 TCCTTAGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGG 150233
Query 131787 CGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCA 131843
| || |||||| || || |||| || | || | |||||||||| ||||| |
Sbjct 150234 CACCCGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGA 150293
Query 131844 ACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTC 131903
|||||| | ||| |||| | | |||||||| | ||| ||| |||| | || |
Sbjct 150294 GCATGGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGC 150353
Query 131904 TGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTG 131962
||| || || || || |||||||| || || || || || || | || || |
Sbjct 150354 GGATACGATGCACATTCAGACCAATACCGCCAGCAGTCTTG-GAAATCATGGCACAAGTC 150412
Query 131963 GTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAG 132022
| || |||| |||||||||||| | ||| || | ||||||| | |||||||||
Sbjct 150413 TTCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAG 150472
Query 132023 GACAACTGTTGGTGA 132037
|||| || ||||||
Sbjct 150473 GACATTTG-TGGTGA 150486
>seq9
Length=355999
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | ||||| || | || || || || || || |||||||||
Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || | || || ||||| ||||| ||| |||||||||||||||| || || ||
Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| |||||| ||||| |||||| ||| | | | || | ||||||| | |||||
Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| || | ||||| |||||||| || || || || ||||||
Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCATA 44947
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| ||||| || | || || || ||||| || |||||||| || | || |
Sbjct 44960 CGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCA 45019
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
|| |||||||| || ||||| | || | |||||| ||||||||||| | |||||||||
Sbjct 45020 TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTG 45079
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||| ||| | | | || | || || | | || || || ||||| ||
Sbjct 45080 TCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATG 45139
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| ||||| || || || || || ||||||||||||
Sbjct 45140 GTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCATA 45175
>seq151
Length=370960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | ||||| || | ||||| || ||||| || |||||||||
Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || |||| |||||||| || |||||| | || || |||||||||||||| ||
Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992
Query 27141 ACACCCTCTTTATCGGCGATCTTG 27164
| ||||| || || |||||||
Sbjct 220993 ATGCCCTCCTTGTCTTGGATCTTG 221016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424932198972600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |