Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq164 174 2e-38 >seq164 Length=316633 Score = 174 bits (192), Expect = 2e-38 Identities = 412/615 (67%), Gaps = 8/615 (1%) Strand=Plus/Plus Query 111468 TTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||||| ||||| | |||||||| ||||| |||||| ||| || || || | || Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || ||||| |||| ||||| || || | || ||||||||||| | ||| || ||| Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121 Query 111587 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 || || | | || | || | | ||| || ||||||| | ||| || || | || Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGA-CCTCTTCCTTACCATGATTTTTCCTTAG 150180 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 |||||||| | | | || |||||||||||||| ||||||| |||| | ||| Sbjct 150181 ATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGG 150240 Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | |||| | |||| || || || || ||| ||| | ||||| ||||| || Sbjct 150241 ACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGG 150300 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 || | ||||| || |||||| || || | |||| || | | || | | | Sbjct 150301 GATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACG 150360 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 ||| | | || |||||||| ||||| ||| || || ||||| | | || || Sbjct 150361 ATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGT 150420 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 |||||||||| | || || |||||| || |||| ||||||||| |||||| || Sbjct 150421 GTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTG 150480 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001 ||| || || || || ||||||||||| || | || || |||| || | | | Sbjct 150481 TGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTG 150539 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| | || |||||||| | | || ||||||||||| ||||| ||||| | || | Sbjct 150540 ACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTA 150599 Query 112062 CCCGCATGAACATGT 112076 | ||||| | ||||| Sbjct 150600 CACGCATAAGCATGT 150614 Score = 141 bits (156), Expect = 1e-28 Identities = 581/906 (64%), Gaps = 24/906 (3%) Strand=Plus/Plus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 |||||||||||| || |||||| |||||| ||||| ||||| | | || |||| Sbjct 149010 AATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTGGGAATCCTCTG 149069 Query 110584 GATGGAACCCCCCGCCTTCACCA-TGA---GATCCTTCATATCCTTGGACCAGAGACCAA 110639 || ||||| |||||| || ||| | | |||||| | | ||||| ||||| | Sbjct 149070 AATAGAACC----GCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCCA 149125 Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTG--TTGACAATGACAAACTCACCTGCGAGGGT 110697 | | ||||| || | || | || || |||| |||||||| || | | Sbjct 149126 TATCTACAAGGTCCTTCAACAGC--CATGGATTTACAACTTGGAACTCACCGGCCAAGAC 149183 Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 | | ||| ||||||| || ||||| |||||||| || || || || | || || Sbjct 149184 ACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTG 149243 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCT---C 110814 | |||||| || |||||||| || || | | || ||| || | ||| | || | Sbjct 149244 AGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGC 149303 Query 110815 CTTGATG-CGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCA 110871 || || | ||| ||| ||||||||| | | | || | || | || |||| | Sbjct 149304 AATGTTGGCCTTCAATGA----ATCCCAGTCCCAAAGATCAG-TAGGGGTGACGTTCC-A 149357 Query 110872 CATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC 110931 |||||| | || | | ||||||||| |||||||||| || |||| |||| | ||| Sbjct 149358 CATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACC 149417 Query 110932 TTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991 | | | || | || ||| || |||| || || || |||||||||||||| Sbjct 149418 AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGAT 149477 Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATAC 111051 ||| || | || | | || || |||||||| | |||| || ||| | Sbjct 149478 CTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGC 149537 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| ||||||||||| ||||| | || ||||||| ||| | | ||| || || Sbjct 149538 ATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGC 149597 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 || ||||| || |||| || |||| | |||||| || || | | || Sbjct 149598 CTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTG 149657 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 |||| || || || || | ||||| | || | | | | ||| | || Sbjct 149658 AGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGAAAGCGGG 149717 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || || | || |||| ||||| || || |||||| | | |||||||| | || Sbjct 149718 TAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGAT 149777 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| ||||| || || ||||| ||||| ||||| ||||| ||| Sbjct 149778 CTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTT 149837 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| ||||||||||||||||| || || | || ||||| ||||| || | || || || Sbjct 149838 GCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGATTGC 149897 Query 111412 CTTCCA 111417 | ||| Sbjct 149898 ATACCA 149903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028663580000