Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq164 174 2e-38
>seq164
Length=316633
Score = 174 bits (192), Expect = 2e-38
Identities = 412/615 (67%), Gaps = 8/615 (1%)
Strand=Plus/Plus
Query 111468 TTGTG-TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526
||||| ||||| | |||||||| ||||| |||||| ||| || || || | ||
Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061
Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586
|| ||||| |||| ||||| || || | || ||||||||||| | ||| || |||
Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121
Query 111587 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645
|| || | | || | || | | ||| || ||||||| | ||| || || | ||
Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGA-CCTCTTCCTTACCATGATTTTTCCTTAG 150180
Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705
|||||||| | | | || |||||||||||||| ||||||| |||| | |||
Sbjct 150181 ATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGG 150240
Query 111706 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762
|| | |||| | |||| || || || || ||| ||| | ||||| ||||| ||
Sbjct 150241 ACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGG 150300
Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822
|| | ||||| || |||||| || || | |||| || | | || | | |
Sbjct 150301 GATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACG 150360
Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882
||| | | || |||||||| ||||| ||| || || ||||| | | || ||
Sbjct 150361 ATGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGT 150420
Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942
|||||||||| | || || |||||| || |||| ||||||||| |||||| ||
Sbjct 150421 GTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTG 150480
Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001
||| || || || || ||||||||||| || | || || |||| || | | |
Sbjct 150481 TGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTG 150539
Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061
|||| | || |||||||| | | || ||||||||||| ||||| ||||| | || |
Sbjct 150540 ACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTA 150599
Query 112062 CCCGCATGAACATGT 112076
| ||||| | |||||
Sbjct 150600 CACGCATAAGCATGT 150614
Score = 141 bits (156), Expect = 1e-28
Identities = 581/906 (64%), Gaps = 24/906 (3%)
Strand=Plus/Plus
Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583
|||||||||||| || |||||| |||||| ||||| ||||| | | || ||||
Sbjct 149010 AATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGATGTTGGGAATCCTCTG 149069
Query 110584 GATGGAACCCCCCGCCTTCACCA-TGA---GATCCTTCATATCCTTGGACCAGAGACCAA 110639
|| ||||| |||||| || ||| | | |||||| | | ||||| ||||| |
Sbjct 149070 AATAGAACC----GCCTTCTGCAATGATTCGGTTCTTCATGTTGTCCGACCACAGACCCA 149125
Query 110640 TCTTCTTGAGGTCATTGACGAGGTGCTTG--TTGACAATGACAAACTCACCTGCGAGGGT 110697
| | ||||| || | || | || || |||| |||||||| || | |
Sbjct 149126 TATCTACAAGGTCCTTCAACAGC--CATGGATTTACAACTTGGAACTCACCGGCCAAGAC 149183
Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757
| | ||| ||||||| || ||||| |||||||| || || || || | || ||
Sbjct 149184 ACGGCGAGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGTTGTTTCCGAGAATCTG 149243
Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCT---C 110814
| |||||| || |||||||| || || | | || ||| || | ||| | || |
Sbjct 149244 AGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTCGCACACCATGCTGAGC 149303
Query 110815 CTTGATG-CGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCA 110871
|| || | ||| ||| ||||||||| | | | || | || | || |||| |
Sbjct 149304 AATGTTGGCCTTCAATGA----ATCCCAGTCCCAAAGATCAG-TAGGGGTGACGTTCC-A 149357
Query 110872 CATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACC 110931
|||||| | || | | ||||||||| |||||||||| || |||| |||| | |||
Sbjct 149358 CATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGTGGCATAAGGACC 149417
Query 110932 TTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 110991
| | | || | || ||| || |||| || || || ||||||||||||||
Sbjct 149418 AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAATGGTTTCAAAGAT 149477
Query 110992 ACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATAC 111051
||| || | || | | || || |||||||| | |||| || ||| |
Sbjct 149478 CTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGAGGGCAAGGAATGC 149537
Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111
||| ||||||||||| ||||| | || ||||||| ||| | | ||| || ||
Sbjct 149538 ATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAATTGCTGCGGCGTGC 149597
Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171
|| ||||| || |||| || |||| | |||||| || || | | ||
Sbjct 149598 CTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGCGAGTGAGCACCTG 149657
Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231
|||| || || || || | ||||| | || | | | | ||| | ||
Sbjct 149658 AGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGTCGACGAAAGCGGG 149717
Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291
|| || | || |||| ||||| || || |||||| | | |||||||| | ||
Sbjct 149718 TAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCGGTGTACTCAATGAT 149777
Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351
|| || || | ||| ||||| || || ||||| ||||| ||||| ||||| |||
Sbjct 149778 CTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTCTGGTTGCTCTTGCGGTT 149837
Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411
||| ||||||||||||||||| || || | || ||||| ||||| || | || || ||
Sbjct 149838 GCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCTGGGACTCTAGGATTGC 149897
Query 111412 CTTCCA 111417
| |||
Sbjct 149898 ATACCA 149903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028663580000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |