Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq164 156 5e-33 seq244 111 2e-19 >seq164 Length=316633 Score = 156 bits (172), Expect = 5e-33 Identities = 710/1103 (64%), Gaps = 32/1103 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||| ||||| ||| | | ||| | | ||| |||||||||| || |||||||| | Sbjct 148817 TGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGAC 148876 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | ||||||| || | ||||| || | | ||| | ||| || | |||| Sbjct 148877 CAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATGT 148936 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||| | |||||| ||||||||||| ||| ||||| || ||||| | | || Sbjct 148937 GGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGA-CA 148995 Query 117985 CATCCTTCATCT-TGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041 || ||| ||| ||| ||||||| || ||| ||||||| ||| || ||||| |||| Sbjct 148996 -ATGGTTC-TCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGA 149053 Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCT 118098 | | || | || || || || || | || | |||| | | |||||| | | Sbjct 149054 TGTTGGGAATCCTCTGAATAGAACCGCCTTC--TG-CAATGATTCGGTTCTTCATGTTGT 149110 Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 118156 ||||| ||||| || | | || |||| || || ||| ||| ||||| || Sbjct 149111 CCGACCACAGACCCATATCTACAAGGTCCTTCAACAGCCATGG--ATTTACAACTTGGAA 149168 Query 118157 CTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCAT 118215 |||||| || | | || | ||| || || || | || ||||||||||||||||| | Sbjct 149169 CTCACCGGCCAAGACACGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGT 149227 Query 118216 TGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTAC 118275 |||| || | || || | ||||| || || ||||| || || | || || ||| | Sbjct 149228 TGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTC 149287 Query 118276 GGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGT 118333 | | ||| | | |||| |||| | | |||||||| | | | || | | Sbjct 149288 GCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAG--TAGG 149345 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 | | |||||| || | || | ||||||||||||| | || || || || | || Sbjct 149346 GGTGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGT 149405 Query 118394 CTCATATGGGCCCTCAACCTCCGCC--AAT-TCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 |||| || || || |||| ||| ||| || || |||||| || || || Sbjct 149406 GGCATAAGGACC---AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTA 149462 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || |||||||| || ||| || | | | ||||| |||||||| | | || Sbjct 149463 AATGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCG 149522 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | || ||| |||| ||||||||||||||||||||||| || || || || || | Sbjct 149523 GAGGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAA 149582 Query 118571 ATTAGACTTCCGAGCGG-TCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 118628 ||| || | | | | ||| | ||||| || ||| ||||| | | ||||| Sbjct 149583 ATTG--CTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGG 149640 Query 118629 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 118688 || |||| |||| |||| || || ||||| | | ||||| | || | | Sbjct 149641 TTGCGAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGA 149700 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 | | ||| | || || || | || ||| || || || | | |||||| | Sbjct 149701 TAGTCGACGAAAGCGGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGA 149760 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | |||||||| || || || ||||| | ||| ||||| || || ||||||||||| Sbjct 149761 GCGGTGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTC 149820 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| ||| || ||||||||||| ||||| ||||| | || ||||| || Sbjct 149821 TGGTTGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTC 149880 Query 118869 TGGGACTTGAGAATAGCCTTCCA 118891 ||||||| || || || | ||| Sbjct 149881 TGGGACTCTAGGATTGCATACCA 149903 Score = 116 bits (128), Expect = 5e-21 Identities = 401/621 (65%), Gaps = 6/621 (1%) Strand=Plus/Plus Query 118942 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 ||||| ||||| | |||||||| ||||| | || | ||| || || || | | Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 |||||||| |||| ||||| || ||| | || ||||||||||| | ||| |||||| Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 || || || |||| | || ||| || | ||||| | || ||||| | | Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 || | ||| | | | || |||||||| || || || || | |||| | ||| | Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241 Query 119181 CG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 || | ||| |||| | || || | |||||| ||| | || || ||||| || Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG 119297 |||| ||||| ||| ||||| || || | |||| || | | || | || | Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || | | || ||||||||| || || ||| || || || || | | || || Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 | ||||| || || || ||| |||| | ||||||||||||| |||||||| Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 119476 || || || || ||||||||||| || || | || || |||| || | | || Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGA 150540 Query 119477 CATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 119536 ||| | || || ||||| | ||| ||||||||| |||||||| || | | || Sbjct 150541 CATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTAC 150600 Query 119537 CCGCATAAACATGTATTGGGG 119557 ||||||| ||||| ||| || Sbjct 150601 ACGCATAAGCATGTGTTGAGG 150621 >seq244 Length=165466 Score = 111 bits (122), Expect = 2e-19 Identities = 280/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| || ||| | ||| ||||||||| Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || ||||| || || | | ||| | | ||| || | | | | ||| |||| Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGC--CGAGGGCTAAGAGCAGAC 56135 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | || |||||||||||| |||| || ||||| |||| || | Sbjct 56136 GGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGC 56195 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||| | | || | | |||| ||| ||||||| || || || | |||| | | Sbjct 56196 ATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTT 56255 Query 129966 GAATGGTCTCCGTGCCAGGTCTA---TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | | || | ||| || | ||| | | || ||| || |||||| | Sbjct 56256 GCACAGCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGG--CA-GGCAAAGT 56312 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | |||||||||||| |||||||| ||||| |||||| ||||||||||||| Sbjct 56313 CAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGA 56372 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||| | |||||| || | ||| | || ||||||||| ||||| | Sbjct 56373 GGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAA 56432 Query 130143 C 130143 | Sbjct 56433 C 56433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431914563000