Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq164 156 5e-33
seq244 111 2e-19
>seq164
Length=316633
Score = 156 bits (172), Expect = 5e-33
Identities = 710/1103 (64%), Gaps = 32/1103 (3%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
|||| ||||| ||| | | ||| | | ||| |||||||||| || |||||||| |
Sbjct 148817 TGAATTGAATTGGTGCAGACGCCGCCATGGTTCGAAGGTAGTACAAGCCAGTCTTGAGAC 148876
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| ||||||| || | ||||| || | | ||| | ||| || | ||||
Sbjct 148877 CAAGCTTCCACCCAGCGAAGTGCATGGATGTAATCTTACCCATGGTAGGCTCCTTCATGT 148936
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||| | |||||| ||||||||||| ||| ||||| || ||||| | | ||
Sbjct 148937 GGATGTTGAGTGATTGGGACTGATCGATGAATGCTCCTCGATCAGCAGCCATTTGGA-CA 148995
Query 117985 CATCCTTCATCT-TGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGA 118041
|| ||| ||| ||| ||||||| || ||| ||||||| ||| || ||||| ||||
Sbjct 148996 -ATGGTTC-TCTGTGAAATTTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCATCAGGGA 149053
Query 118042 TATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGA---GATCCTTCATATCCT 118098
| | || | || || || || || | || | |||| | | |||||| | |
Sbjct 149054 TGTTGGGAATCCTCTGAATAGAACCGCCTTC--TG-CAATGATTCGGTTCTTCATGTTGT 149110
Query 118099 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 118156
||||| ||||| || | | || |||| || || ||| ||| ||||| ||
Sbjct 149111 CCGACCACAGACCCATATCTACAAGGTCCTTCAACAGCCATGG--ATTTACAACTTGGAA 149168
Query 118157 CTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCAT 118215
|||||| || | | || | ||| || || || | || ||||||||||||||||| |
Sbjct 149169 CTCACCGGCCAAGACACGGCG-AGAGTAAATGTTTGAGGTATATGGCTCAAAGCACTCGT 149227
Query 118216 TGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTAC 118275
|||| || | || || | ||||| || || ||||| || || | || || ||| |
Sbjct 149228 TGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGTTTC 149287
Query 118276 GGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGT 118333
| | ||| | | |||| |||| | | |||||||| | | | || | |
Sbjct 149288 GCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAG--TAGG 149345
Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393
| | |||||| || | || | ||||||||||||| | || || || || | ||
Sbjct 149346 GGTGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGGT 149405
Query 118394 CTCATATGGGCCCTCAACCTCCGCC--AAT-TCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450
|||| || || || |||| ||| ||| || || |||||| || || ||
Sbjct 149406 GGCATAAGGACC---AAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTA 149462
Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510
|| |||||||| || ||| || | | | ||||| |||||||| | | ||
Sbjct 149463 AATGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCG 149522
Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570
| || ||| |||| ||||||||||||||||||||||| || || || || || |
Sbjct 149523 GAGGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAA 149582
Query 118571 ATTAGACTTCCGAGCGG-TCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 118628
||| || | | | | ||| | ||||| || ||| ||||| | | |||||
Sbjct 149583 ATTG--CTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGG 149640
Query 118629 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 118688
|| |||| |||| |||| || || ||||| | | ||||| | || | |
Sbjct 149641 TTGCGAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGA 149700
Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748
| | ||| | || || || | || ||| || || || | | |||||| |
Sbjct 149701 TAGTCGACGAAAGCGGGTAGAGCAAGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGA 149760
Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808
| |||||||| || || || ||||| | ||| ||||| || || |||||||||||
Sbjct 149761 GCGGTGTACTCAATGATCTCAGTGCAGAGGTTAGAACTGCGGATAGTTCCCAAGTTCTTC 149820
Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868
|| || ||| ||| || ||||||||||| ||||| ||||| | || ||||| ||
Sbjct 149821 TGGTTGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTC 149880
Query 118869 TGGGACTTGAGAATAGCCTTCCA 118891
||||||| || || || | |||
Sbjct 149881 TGGGACTCTAGGATTGCATACCA 149903
Score = 116 bits (128), Expect = 5e-21
Identities = 401/621 (65%), Gaps = 6/621 (1%)
Strand=Plus/Plus
Query 118942 TTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000
||||| ||||| | |||||||| ||||| | || | ||| || || || | |
Sbjct 150002 TTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTG 150061
Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060
|||||||| |||| ||||| || ||| | || ||||||||||| | ||| ||||||
Sbjct 150062 GGGCAGAACAGAGTCCATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATC 150121
Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120
|| || || |||| | || ||| || | ||||| | || ||||| | |
Sbjct 150122 CATAGTGCGTAGAACAAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGA 150181
Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180
|| | ||| | | | || |||||||| || || || || | |||| | ||| |
Sbjct 150182 TCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGA 150241
Query 119181 CG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237
|| | ||| |||| | || || | |||||| ||| | || || ||||| ||
Sbjct 150242 CGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGG 150301
Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG 119297
|||| ||||| ||| ||||| || || | |||| || | | || | || |
Sbjct 150302 ATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGA 150361
Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357
|| | | || ||||||||| || || ||| || || || || | | || ||
Sbjct 150362 TGCACATTCAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTG 150421
Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417
| ||||| || || || ||| |||| | ||||||||||||| ||||||||
Sbjct 150422 TCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGT 150481
Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGA 119476
|| || || || ||||||||||| || || | || || |||| || | | ||
Sbjct 150482 GGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAA-GTATTTGTTTGA 150540
Query 119477 CATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGAC 119536
||| | || || ||||| | ||| ||||||||| |||||||| || | | ||
Sbjct 150541 CATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTAC 150600
Query 119537 CCGCATAAACATGTATTGGGG 119557
||||||| ||||| ||| ||
Sbjct 150601 ACGCATAAGCATGTGTTGAGG 150621
>seq244
Length=165466
Score = 111 bits (122), Expect = 2e-19
Identities = 280/421 (67%), Gaps = 10/421 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| ||||| ||||||||||||||||| ||||| || ||| | ||| |||||||||
Sbjct 56018 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCGCCAGGGAGATGTTCTCCATA 56077
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
|| ||||| || || | | ||| | | ||| || | | | | ||| ||||
Sbjct 56078 AAGTCAAAGGGATTGGTAGCGTTGTAGAACTTGTTGTTGC--CGAGGGCTAAGAGCAGAC 56135
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | || |||||||||||| |||| || ||||| |||| || |
Sbjct 56136 GGTCGGCAACAAACTCAATGTACTGGCACATGAGGGTGGCATTCATGCCGAGCAGTGCGC 56195
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
|||| | | || | | |||| ||| ||||||| || || || | |||| | |
Sbjct 56196 ATGGCAAAGACTCGGACAAGAACTCCTGCTCAATGGTGACGGCCTCAGTGATGATGTCTT 56255
Query 129966 GAATGGTCTCCGTGCCAGGTCTA---TTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022
| | | || | ||| || | ||| | | || ||| || |||||| |
Sbjct 56256 GCACAGCCTGCTTGCTTGGGCGCGACTTGAGGTGGGAAAAGAGGAGG--CA-GGCAAAGT 56312
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| | |||||||||||| |||||||| ||||| |||||| |||||||||||||
Sbjct 56313 CAGTGTGCATACCCTCGTCACGAGAGATGAGCTCATTGGAGAAGGTGAGACCTGGCATGA 56372
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| || |||||||| | |||||| || | ||| | || ||||||||| ||||| |
Sbjct 56373 GGCCACGCTTCTTGAGCCAGAAGATGGATGCAAAGGCACCGCTGAAGAAGATACCCTCAA 56432
Query 130143 C 130143
|
Sbjct 56433 C 56433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618431914563000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |