Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq164 178 2e-39
seq244 122 1e-22
seq6 89.7 6e-13
>seq164
Length=316633
Score = 178 bits (196), Expect = 2e-39
Identities = 907/1433 (63%), Gaps = 76/1433 (5%)
Strand=Plus/Minus
Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288
||||| | ||||| || || | || ||||| || ||||||||||| || | | ||||
Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555
Query 104289 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347
|||| || | ||||| | | || |||| || || | || ||||||||||| ||
Sbjct 150554 CATATAACTACATGTCAAACAAATAC-TTCACACATGCCTCGCCGACCCTCTTCAACGCA 150496
Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407
|| || || ||| ||||||||| ||||||||| |||| || |||||| || ||
Sbjct 150495 GGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATT 150436
Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467
| |||||||||| || || | | ||||| || || ||| ||||| ||||||
Sbjct 150435 GAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATT 150376
Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 104527
|| || | | ||| | | | || | | || |||| | || || ||||||
Sbjct 150375 GGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACC 150316
Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587
|| ||||| | || || ||||| ||||| | ||| ||| || || || || ||||
Sbjct 150315 TCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAG 150256
Query 104588 GCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644
| |||| | || ||| | |||| ||||||| |||||||||||||| || |
Sbjct 150255 GGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTT 150196
Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCT 104703
| | |||||||| | | || || ||| | || |||| | |||| ||||| |
Sbjct 150195 TTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTT 150137
Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763
|||| ||| || ||||| || || | ||||||||| | || | |||| ||| | ||
Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077
Query 104764 GTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGA 104823
| |||| || || || || | || ||||| ||| |||| | ||||| ||||||||
Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGA 150017
Query 104824 AGCCCTTTA-CACAA---AGT---ACGAGGAAGAAGG------TCGGGCGACTG------ 104864
| || || ||||| ||| ||||| | || | || |||||
Sbjct 150016 GGAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTC 149957
Query 104865 -------CGACGGTG-----------------CCAG---CTGCC--GATG-TGTGGAAAG 104894
||| ||| ||| |||| || | ||||| | |
Sbjct 149956 CCAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATG 149897
Query 104895 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTA 104954
| || || |||| || || |||||||| | ||||| ||||| ||||| || || || |
Sbjct 149896 CAATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCA 149837
Query 104955 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAA 105014
||| ||||| || || ||||| ||||| ||| ||||| || ||||| || || |
Sbjct 149836 ACCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGA 149777
Query 105015 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 105074
|| | || | || | ||||||| || || || ||| | | || | ||||| |
Sbjct 149776 TCATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTAC 149717
Query 105075 CCAAGTATGTGG---ATC-CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTT 105130
|| | || | ||| | | | | || ||||| | || |||||||| ||
Sbjct 149716 CCGCTTTCGTCGACTATCATCGTGGCGA----ATATGATTTCCAGAAGCTCCACGAGGTC 149661
Query 105131 ACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG 105190
|| | |||| |||||||||| | | || || |||| |||||||| ||
Sbjct 149660 ACTCAGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAA 149601
Query 105191 ACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCG 105250
|| || ||| | || ||||| || || || |||||||| || ||||||||
Sbjct 149600 GAGGCACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCT 149541
Query 105251 GATGTATTCATTCTTTG---TCGCCACG-CATTTGATTCCGACGAAGCGAAGGAAATCAA 105306
|||| ||||| ||| || || | | |||||||| || || | | | ||||
Sbjct 149540 GATG----CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAA 149485
Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGA 105366
| | || ||||| ||||| || || || || || || | ||| | | |
Sbjct 149484 CACTCAGATCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAA 149425
Query 105367 GGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATT 105426
|| |||||| |||| |||| || |||||||| | || ||||| | | ||||
Sbjct 149424 GGAGCTTGGTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATA 149365
Query 105427 TGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGC 105484
|| |||| |||| || | || | || || | |||||||| | | |||| |
Sbjct 149364 CGACATGT-GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGATTCATTGAAGGCCAAC 149307
Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544
|| || | ||| | || ||| ||||| | || || |||||||| || ||||||
Sbjct 149306 ATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACC 149247
Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597
| || || | || || || || |||||||| || || || | ||||| ||
Sbjct 149246 TCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTA 149194
>seq244
Length=165466
Score = 122 bits (134), Expect = 1e-22
Identities = 119/151 (79%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTA 94864
||| || |||| ||||| |||||||||||||||||| ||| |||| ||| | |
Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397
Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924
| | |||||||||||||| || ||||||||||||||| ||||||||| ||||| ||||
Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337
Query 94925 CTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||||| | ||| || |||||
Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGC 56306
>seq6
Length=362673
Score = 89.7 bits (98), Expect = 6e-13
Identities = 210/317 (66%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 169231
|| ||||| ||| |||||||| ||| ||| ||||||||||||| | | ||||| ||
Sbjct 304931 CCTTTGATATGGCTACCGTCGTGATCCTGATCGGTCATGATCATGATATGCCCATAACGT 304990
Query 169232 AGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCG 169291
|| | ||| || ||||| || || || || | || |||||||| ||
Sbjct 304991 AGGCCCTTTGTATCGGTGTATTCCTTCTTGTGCTGCAGCCCGATGAACTTCTTGATATTT 305050
Query 169292 TTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTC 169351
| | |||||| || | || ||| || || ||||| |||||||| | ||
Sbjct 305051 TGTATCTCTTGATTCTTGGAGATCTGATCGATGGAAGCATCACGAACATTGAGAAGTTTA 305110
Query 169352 CCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCG 169411
|||||||||||| | || || ||| ||| | ||||| || | || | | |||
Sbjct 305111 CCACGAAGAGGGTACACCCCAAAGTAATCGGGGTTAACGATGGCCCGTCCAGACAAGGCG 305170
Query 169412 AGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTA 169471
|||| | || |||||||| ||||||| ||| || |||||||| | | | |||
Sbjct 305171 AGAGGAGTAGCTGAGTCACCTTCGGTGAGGATCAGAGTACATTTATAACCCTCTTTAGTA 305230
Query 169472 CCCGCCTTGTTCGCATC 169488
|| || ||||| |||||
Sbjct 305231 CCGGCTTTGTTTGCATC 305247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257701427000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |