Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq164 178 2e-39 seq244 122 1e-22 seq6 89.7 6e-13 >seq164 Length=316633 Score = 178 bits (196), Expect = 2e-39 Identities = 907/1433 (63%), Gaps = 76/1433 (5%) Strand=Plus/Minus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || || | || ||||| || ||||||||||| || | | |||| Sbjct 150614 ACATGCTTATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATTGAGTCCGCGATCGAGA 150555 Query 104289 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 104347 |||| || | ||||| | | || |||| || || | || ||||||||||| || Sbjct 150554 CATATAACTACATGTCAAACAAATAC-TTCACACATGCCTCGCCGACCCTCTTCAACGCA 150496 Query 104348 GGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 104407 || || || ||| ||||||||| ||||||||| |||| || |||||| || || Sbjct 150495 GGCACCCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATT 150436 Query 104408 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 104467 | |||||||||| || || | | ||||| || || ||| ||||| |||||| Sbjct 150435 GAAGGTATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATT 150376 Query 104468 GGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAA 104527 || || | | ||| | | | || | | || |||| | || || |||||| Sbjct 150375 GGTCTGAATGTGCATCGTATCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACC 150316 Query 104528 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA 104587 || ||||| | || || ||||| ||||| | ||| ||| || || || || |||| Sbjct 150315 TCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAG 150256 Query 104588 GCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 | |||| | || ||| | |||| ||||||| |||||||||||||| || | Sbjct 150255 GGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTT 150196 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CGCGATCT 104703 | | |||||||| | | || || ||| | || |||| | |||| ||||| | Sbjct 150195 TTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGG-TCCGTGCTCGCGACTT 150137 Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763 |||| ||| || ||||| || || | ||||||||| | || | |||| ||| | || Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077 Query 104764 GTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGA 104823 | |||| || || || || | || ||||| ||| |||| | ||||| |||||||| Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTTGA 150017 Query 104824 AGCCCTTTA-CACAA---AGT---ACGAGGAAGAAGG------TCGGGCGACTG------ 104864 | || || ||||| ||| ||||| | || | || ||||| Sbjct 150016 GGAACTCTACCACAAGTGAGTCAAACGAGTACAAACGTTTCACTCCAATGACTGACATTC 149957 Query 104865 -------CGACGGTG-----------------CCAG---CTGCC--GATG-TGTGGAAAG 104894 ||| ||| ||| |||| || | ||||| | | Sbjct 149956 CCAGATACGAGCGTGAAGGCCGTGGGCGTGAAACAGTTCGTGCCCAGAAGCTGTGGTATG 149897 Query 104895 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTA 104954 | || || |||| || || |||||||| | ||||| ||||| ||||| || || || | Sbjct 149896 CAATCCTAGAGTCCCAGACTGAGACTGGAAACCCATATATGCTCTACAAGGATGCATGCA 149837 Query 104955 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAA 105014 ||| ||||| || || ||||| ||||| ||| ||||| || ||||| || || | Sbjct 149836 ACCGCAAGAGCAACCAGAAGAACTTGGGAACTATCCGCAGTTCTAACCTCTGCACTGAGA 149777 Query 105015 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 105074 || | || | || | ||||||| || || || ||| | | || | ||||| | Sbjct 149776 TCATTGAGTACACCGCTCCAGATGAGGTCGCGGTATGCAACTTGGGCTCTCTTGCTCTAC 149717 Query 105075 CCAAGTATGTGG---ATC-CAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTT 105130 || | || | ||| | | | | || ||||| | || |||||||| || Sbjct 149716 CCGCTTTCGTCGACTATCATCGTGGCGA----ATATGATTTCCAGAAGCTCCACGAGGTC 149661 Query 105131 ACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAG 105190 || | |||| |||||||||| | | || || |||| |||||||| || Sbjct 149660 ACTCAGGTGCTCACTCGCAACCTAAACAAAATCATCGAAGTAAATCACTACCCCGTCGAA 149601 Query 105191 ACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCG 105250 || || ||| | || ||||| || || || |||||||| || |||||||| Sbjct 149600 GAGGCACGCCGCAGCAATTTCAGGCACCGACCTATCGGCCTCGGTGTCCAAGGTCTCGCT 149541 Query 105251 GATGTATTCATTCTTTG---TCGCCACG-CATTTGATTCCGACGAAGCGAAGGAAATCAA 105306 |||| ||||| ||| || || | | |||||||| || || | | | |||| Sbjct 149540 GATG----CATTCCTTGCCCTCCGCATGCCCTTTGATTCTCCAGAGGCTAGGAAGCTCAA 149485 Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGA 105366 | | || ||||| ||||| || || || || || || | ||| | | | Sbjct 149484 CACTCAGATCTTTGAAACCATTTACCATGCTGCCCTCACTGCATCCTGCGAGATTTCTAA 149425 Query 105367 GGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATT 105426 || |||||| |||| |||| || |||||||| | || ||||| | | |||| Sbjct 149424 GGAGCTTGGTCCTTATGCCACCTACGAAGGTTCTCCCGTGTCCCAAGGTATCTTGCAATA 149365 Query 105427 TGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGC 105484 || |||| |||| || | || | || || | |||||||| | | |||| | Sbjct 149364 CGACATGT-GGAACGTCACCCCTA-CTGATCTTTGGGACTGGGATTCATTGAAGGCCAAC 149307 Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544 || || | ||| | || ||| ||||| | || || |||||||| || |||||| Sbjct 149306 ATTGCTCAGCATGGTGTGCGAAACTCGCTCCTTGTTGCCCCTATGCCAACGGCTTCCACC 149247 Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 | || || | || || || || |||||||| || || || | ||||| || Sbjct 149246 TCTCAGATTCTCGGAAACAACGAGTGCTTTGAGCCATATACCTCAAACATTTA 149194 >seq244 Length=165466 Score = 122 bits (134), Expect = 1e-22 Identities = 119/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 94806 GCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTA 94864 ||| || |||| ||||| |||||||||||||||||| ||| |||| ||| | | Sbjct 56455 GCGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCATCCA 56397 Query 94865 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 94924 | | |||||||||||||| || ||||||||||||||| ||||||||| ||||| |||| Sbjct 56396 TCTTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCT 56337 Query 94925 CTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||||| | ||| || ||||| Sbjct 56336 CTCGTGACGAGGGTATGCACACTGACTTTGC 56306 >seq6 Length=362673 Score = 89.7 bits (98), Expect = 6e-13 Identities = 210/317 (66%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGA 169231 || ||||| ||| |||||||| ||| ||| ||||||||||||| | | ||||| || Sbjct 304931 CCTTTGATATGGCTACCGTCGTGATCCTGATCGGTCATGATCATGATATGCCCATAACGT 304990 Query 169232 AGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCG 169291 || | ||| || ||||| || || || || | || |||||||| || Sbjct 304991 AGGCCCTTTGTATCGGTGTATTCCTTCTTGTGCTGCAGCCCGATGAACTTCTTGATATTT 305050 Query 169292 TTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTC 169351 | | |||||| || | || ||| || || ||||| |||||||| | || Sbjct 305051 TGTATCTCTTGATTCTTGGAGATCTGATCGATGGAAGCATCACGAACATTGAGAAGTTTA 305110 Query 169352 CCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCG 169411 |||||||||||| | || || ||| ||| | ||||| || | || | | ||| Sbjct 305111 CCACGAAGAGGGTACACCCCAAAGTAATCGGGGTTAACGATGGCCCGTCCAGACAAGGCG 305170 Query 169412 AGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTGCCGTA 169471 |||| | || |||||||| ||||||| ||| || |||||||| | | | ||| Sbjct 305171 AGAGGAGTAGCTGAGTCACCTTCGGTGAGGATCAGAGTACATTTATAACCCTCTTTAGTA 305230 Query 169472 CCCGCCTTGTTCGCATC 169488 || || ||||| ||||| Sbjct 305231 CCGGCTTTGTTTGCATC 305247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257701427000