Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq9 221 4e-52
seq56 149 2e-30
seq382 91.5 4e-13
>seq9
Length=355999
Score = 221 bits (244), Expect = 4e-52
Identities = 498/743 (67%), Gaps = 18/743 (2%)
Strand=Plus/Plus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
||||||| || |||||| | || ||||| || || || || | | | | | ||||||
Sbjct 269559 CCGCTATTGGTATCGATCTCGGAACTACCTACTCCTGCGTGGGTATCTTCCGTGATGATC 269618
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
|| | ||||| ||||| || || || || ||| | || ||||| || | |||||| || |
Sbjct 269619 GTATCGAAATCATTGCCAACGACCAGGGCAACCGCACCACGCCCTCTTTCGTTGCCTTCA 269678
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
|||| || |||||| | || || || || ||||| || || | || || ||| |
Sbjct 269679 CCGATACCGAGCGTCTCATCGGAGACTCCGCAAAGAACCAGGTCGCCATGAACCCAGCCA 269738
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432
| || || || ||||||||||| || || ||| | | || | ||| | ||
Sbjct 269739 ACACTGTCTTCGATGCTAAGCGTCTCATCGGTCGCAAGTTCGCCGACGCTGAGGTC---- 269794
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
|| | ||| | || || || || || | || | || | ||| || || |
Sbjct 269795 CAGGCCGATATGAAGCACTTCCCCTTCAAGGTCATCGAGAAGGCCGGC---AAGCCTGTC 269851
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
|| ||||| || | || || || || || || |||||| || || || || |||
Sbjct 269852 ATCGAGGTCGAGTTCAAGGGCGAGCAGAAGACTTTCACACCCGAGGAGATCTCCTCTATG 269911
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
|| | || |||| ||| | ||| || |||| | |||| || || | | ||
Sbjct 269912 GTCCTTACCAAGATGAGGGAGACTGCAGAGTCATACCTTGGTGGCACCGTTAACAACGCC 269971
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| | ||||| || ||||| || || || | |||||| || || || ||||| ||
Sbjct 269972 GTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCCGGT 270031
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
||| || || || || || || |||| || || || ||||||||||| || |||||
Sbjct 270032 CTCATCGCTGGTTTGAACGTGCTCCGAATCATCAACGAGCCCACTGCTGCCGCCATTGCC 270091
Query 349733 TATGGGCTTGATAAAATGAGTGAC---CAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
||||| ||||| || | || |||| | || || | || || || ||| | |||
Sbjct 270092 TATGGTCTTGACAAGAAGA-TGACTGGCGAGCGCAACGTCTTG--ATCTTCGATCTTGGT 270148
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
|||||||| || ||||| || || || ||| | || ||||| || || || || ||| |
Sbjct 270149 GGTGGTACCTTCGATGTCTCCCTCCTCACAATCGAGGAGGGCATCTTCGAGGTCAAATCG 270208
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
|||||||| ||||||||||| ||||||||||| || || ||||| || || |||||
Sbjct 270209 ACTGCTGGCGATACACATCTGGGTGGAGAAGACTTCGACAATCGACTTGTGAATCATTTC 270268
Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932
||| ||||| || || |||||
Sbjct 270269 ACTAATGAATTCAAACG-CAAGC 270290
Score = 147 bits (162), Expect = 7e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||| ||||| ||||| || || || ||
Sbjct 44944 CATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTC 45003
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| || || || ||||| |||||||| | ||| |||||||| ||
Sbjct 45004 TGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGG 45063
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || ||||| |||||||| || | |||||| || || || | ||| |||| ||
Sbjct 45064 CGGGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTC 45123
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || ||||| || || || || |||||
Sbjct 45124 GACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 132 bits (146), Expect = 1e-25
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | || ||||||||||| || || || || || || || |
Sbjct 45168 TTTGCATACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGT 45227
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || || || || ||||| || ||||| || ||||| ||||| | || || || |
Sbjct 45228 AGTCGGACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGT 45287
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || ||||||||||| | || ||||| || || | |||||| |
Sbjct 45288 CTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGG 45347
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| ||||| || || | ||||| |||||
Sbjct 45348 ATTCGACTTCGAGGGTGATGGTCTTGCCGGT 45378
Score = 111 bits (122), Expect = 5e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| ||||| || || || || || || || || || || | ||||| ||||| ||||
Sbjct 44740 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAA 44798
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || ||||| || || ||||| || || ||||| || || || || ||||| || |
Sbjct 44799 GCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGA 44858
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| || | ||| || || || || | || || | ||||| || || || | |||||| |
Sbjct 44859 TCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGC 44918
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || || |||||||||||
Sbjct 44919 CAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 95.1 bits (104), Expect = 4e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || ||||| ||||| || || || || || || || ||
Sbjct 45455 CATACCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTC 45514
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || ||||| || || || || || ||||| | || || || || ||
Sbjct 45515 GGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGG 45574
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || || || ||||| ||||| | |||||||| || || | || || | ||
Sbjct 45575 GGGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTC 45634
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||| | || | |||||||| ||
Sbjct 45635 GACTTCCAAGGTGATGGTCTTTCCCGT 45661
>seq56
Length=358881
Score = 149 bits (164), Expect = 2e-30
Identities = 256/367 (70%), Gaps = 10/367 (3%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590
||||| ||||| || | |||||||| | || |||||||| ||||||| ||| || |
Sbjct 209229 CCCGAGGAAATCTCGGCTATGGTTTTGGGCAAGATGAAGGAGGTTGCTGAGAGC-TACCT 209171
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|| || || || | | || ||| | ||||| || ||||| || || || ||||||||
Sbjct 209170 TGGAGAGACCGTCAAGAACGCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCCCAGCG 209111
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
| || || || || || || | || || || | || ||||| | | |||| ||
Sbjct 209110 CGCCGCTACCAAGGACGCCGGAACTATCGCCGGTCTCAACGTTCTCCGTGTCGTTAACGA 209051
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766
||| || || || || | || || || ||||| || || |||||| ||| ||
Sbjct 209050 ACCTACCGCCGCCGCTCTCGCCTACGGTCTTGACAA---GACTGACCA-GAAGGAACGCC 208995
Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826
| || | | | ||| | |||||||||||||| ||||| || | || || | ||||
Sbjct 208994 AGATCATCGTCTACGATCTCGGTGGTGGTACTTTCGATGTTTCCATCCTTACCATCGAAG 208935
Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886
|||| |||| |||||| || | || ||||| || || ||||||||||| |||||||| |
Sbjct 208934 AGGGTGTTTTCGAAGTTCAATCTACCGCTGGAGACACTCATCTTGGTGGTGAAGATTTCG 208875
Query 349887 ATAATCG 349893
|||| ||
Sbjct 208874 ATAACCG 208868
>seq382
Length=167612
Score = 91.5 bits (100), Expect = 4e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || ||||| || |||||||| || || || || || || ||
Sbjct 145481 ACCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 145422
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || || || ||||| || |||||||||||||| ||||| ||||| || || ||
Sbjct 145421 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 145362
Query 140630 AATTCCTTCTTTATC 140644
||| || || || ||
Sbjct 145361 AATGCCCTCCTTGTC 145347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515246148966275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |