Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq9 221 4e-52 seq56 149 2e-30 seq382 91.5 4e-13 >seq9 Length=355999 Score = 221 bits (244), Expect = 4e-52 Identities = 498/743 (67%), Gaps = 18/743 (2%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||||| || |||||| | || ||||| || || || || | | | | | |||||| Sbjct 269559 CCGCTATTGGTATCGATCTCGGAACTACCTACTCCTGCGTGGGTATCTTCCGTGATGATC 269618 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 || | ||||| ||||| || || || || ||| | || ||||| || | |||||| || | Sbjct 269619 GTATCGAAATCATTGCCAACGACCAGGGCAACCGCACCACGCCCTCTTTCGTTGCCTTCA 269678 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| | || || || || ||||| || || | || || ||| | Sbjct 269679 CCGATACCGAGCGTCTCATCGGAGACTCCGCAAAGAACCAGGTCGCCATGAACCCAGCCA 269738 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACA 349432 | || || || ||||||||||| || || ||| | | || | ||| | || Sbjct 269739 ACACTGTCTTCGATGCTAAGCGTCTCATCGGTCGCAAGTTCGCCGACGCTGAGGTC---- 269794 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || | ||| | || || || || || | || | || | ||| || || | Sbjct 269795 CAGGCCGATATGAAGCACTTCCCCTTCAAGGTCATCGAGAAGGCCGGC---AAGCCTGTC 269851 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 || ||||| || | || || || || || || |||||| || || || || ||| Sbjct 269852 ATCGAGGTCGAGTTCAAGGGCGAGCAGAAGACTTTCACACCCGAGGAGATCTCCTCTATG 269911 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 || | || |||| ||| | ||| || |||| | |||| || || | | || Sbjct 269912 GTCCTTACCAAGATGAGGGAGACTGCAGAGTCATACCTTGGTGGCACCGTTAACAACGCC 269971 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || | ||||| || ||||| || || || | |||||| || || || ||||| || Sbjct 269972 GTCGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCCGGT 270031 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 ||| || || || || || || |||| || || || ||||||||||| || ||||| Sbjct 270032 CTCATCGCTGGTTTGAACGTGCTCCGAATCATCAACGAGCCCACTGCTGCCGCCATTGCC 270091 Query 349733 TATGGGCTTGATAAAATGAGTGAC---CAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 ||||| ||||| || | || |||| | || || | || || || ||| | ||| Sbjct 270092 TATGGTCTTGACAAGAAGA-TGACTGGCGAGCGCAACGTCTTG--ATCTTCGATCTTGGT 270148 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || ||| | || ||||| || || || || ||| | Sbjct 270149 GGTGGTACCTTCGATGTCTCCCTCCTCACAATCGAGGAGGGCATCTTCGAGGTCAAATCG 270208 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 |||||||| ||||||||||| ||||||||||| || || ||||| || || ||||| Sbjct 270209 ACTGCTGGCGATACACATCTGGGTGGAGAAGACTTCGACAATCGACTTGTGAATCATTTC 270268 Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932 ||| ||||| || || ||||| Sbjct 270269 ACTAATGAATTCAAACG-CAAGC 270290 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| ||||| || || || || Sbjct 44944 CATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTC 45003 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || || || ||||| |||||||| | ||| |||||||| || Sbjct 45004 TGACAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGG 45063 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| |||||||| || | |||||| || || || | ||| |||| || Sbjct 45064 CGGGATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTC 45123 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || ||||| || || || || ||||| Sbjct 45124 GACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || ||||||||||| || || || || || || || | Sbjct 45168 TTTGCATACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGT 45227 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || ||||| || ||||| ||||| | || || || | Sbjct 45228 AGTCGGACAAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGT 45287 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||||||||| | || ||||| || || | |||||| | Sbjct 45288 CTGGAGGAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGG 45347 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| ||||| || || | ||||| ||||| Sbjct 45348 ATTCGACTTCGAGGGTGATGGTCTTGCCGGT 45378 Score = 111 bits (122), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || || || || || || || || || || | ||||| ||||| |||| Sbjct 44740 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAA 44798 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| || || ||||| || || ||||| || || || || ||||| || | Sbjct 44799 GCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGA 44858 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | ||| || || || || | || || | ||||| || || || | |||||| | Sbjct 44859 TCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGC 44918 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 44919 CAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 95.1 bits (104), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| ||||| || || || || || || || || Sbjct 45455 CATACCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTC 45514 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| || || || || || ||||| | || || || || || Sbjct 45515 GGACAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGG 45574 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| ||||| | |||||||| || || | || || | || Sbjct 45575 GGGAATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTC 45634 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| | || | |||||||| || Sbjct 45635 GACTTCCAAGGTGATGGTCTTTCCCGT 45661 >seq56 Length=358881 Score = 149 bits (164), Expect = 2e-30 Identities = 256/367 (70%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGA-AGCATATTT 349590 ||||| ||||| || | |||||||| | || |||||||| ||||||| ||| || | Sbjct 209229 CCCGAGGAAATCTCGGCTATGGTTTTGGGCAAGATGAAGGAGGTTGCTGAGAGC-TACCT 209171 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || || || || | | || ||| | ||||| || ||||| || || || |||||||| Sbjct 209170 TGGAGAGACCGTCAAGAACGCCGTTGTCACTGTTCCCGCCTACTTCAACGACGCCCAGCG 209111 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | || || || || || || | || || || | || ||||| | | |||| || Sbjct 209110 CGCCGCTACCAAGGACGCCGGAACTATCGCCGGTCTCAACGTTCTCCGTGTCGTTAACGA 209051 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 ||| || || || || | || || || ||||| || || |||||| ||| || Sbjct 209050 ACCTACCGCCGCCGCTCTCGCCTACGGTCTTGACAA---GACTGACCA-GAAGGAACGCC 208995 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | || | | | ||| | |||||||||||||| ||||| || | || || | |||| Sbjct 208994 AGATCATCGTCTACGATCTCGGTGGTGGTACTTTCGATGTTTCCATCCTTACCATCGAAG 208935 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 |||| |||| |||||| || | || ||||| || || ||||||||||| |||||||| | Sbjct 208934 AGGGTGTTTTCGAAGTTCAATCTACCGCTGGAGACACTCATCTTGGTGGTGAAGATTTCG 208875 Query 349887 ATAATCG 349893 |||| || Sbjct 208874 ATAACCG 208868 >seq382 Length=167612 Score = 91.5 bits (100), Expect = 4e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || ||||| || |||||||| || || || || || || || Sbjct 145481 ACCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 145422 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || ||||| || |||||||||||||| ||||| ||||| || || || Sbjct 145421 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 145362 Query 140630 AATTCCTTCTTTATC 140644 ||| || || || || Sbjct 145361 AATGCCCTCCTTGTC 145347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246148966275