Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq164 161 1e-34 seq244 87.8 2e-12 >seq164 Length=316633 Score = 161 bits (178), Expect = 1e-34 Identities = 399/597 (67%), Gaps = 20/597 (3%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACATA 19173 ||||| || || || ||||| || ||||| ||| | |||||||||| |||||| Sbjct 150606 ATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATT----GAGTCCGCGATCGAGACATA 150551 Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233 || ||| | || | |||||| || || |||||||||| |||||||| || || Sbjct 150550 TAACTACATGTCAAACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAGGCAC 150491 Query 19234 GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293 || || ||||| || ||||| | | || |||||||| |||||||| || Sbjct 150490 CCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGG 150431 Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353 ||||| || || || ||| || || || |||||| | || ||||| || | Sbjct 150430 TATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATTGGTCT 150371 Query 19354 CCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA--GTAG 19409 | ||| ||| |||||| | | ||| | | || || || |||| | ||| Sbjct 150370 GAATGTGCATCG--TATCCGCGCTACTGG--CTCCTAT--ATTGGCGGAACCAATGGTAC 150317 Query 19410 C--CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCA 19467 | | | ||| || |||| ||||||||||||| ||||||||| || | |||||| | || Sbjct 150316 CTCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCA 150257 Query 19468 GGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGT 19527 ||| || || || ||| | ||||||||||| ||||||||||||||||| ||||| Sbjct 150256 GGGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGT 150197 Query 19528 CATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCT 19587 | | ||||| || || | || || ||| | || ||| | || ||||||| | Sbjct 150196 TTTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGGTCCGTGCTCGCGACTT 150137 Query 19588 CTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647 ||| || | ||||| || ||| | |||||| || || | || ||| ||||| Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077 Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 | ||| | ||||| ||||| |||||||| ||||||| || || || | ||| Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTT 150020 Score = 127 bits (140), Expect = 2e-24 Identities = 380/583 (65%), Gaps = 4/583 (1%) Strand=Plus/Plus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || ||||| || |||| ||||| || |||| ||||| | ||| ||| || || Sbjct 150026 TCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTCCATTCGCCG 150085 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | || | || || |||||| | ||| |||||||| || || ||| | |||||| Sbjct 150086 TTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAACAAGTCGCGA 150145 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 ||| | ||| || | || || || | || || || ||| | | | ||||||| Sbjct 150146 GCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAAACGTCGGCG 150205 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| ||||| |||||||||||||| | |||| ||||| || ||||| | |||| Sbjct 150206 TGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACG 150265 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 || || || ||||||||| | || ||||||||||| | || || | || | || || Sbjct 150266 TATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTG 150325 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTCCGATGCCCC 79663 || ||| || | || | || || | | ||| ||| | | || || || | Sbjct 150326 GTTCCGCCAATATAGGAGCCAGTAGCGCGGA--TACGATGCACATTCAGACCAATACCGC 150383 Query 79664 CGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGT 79723 | | |||||| || || || ||| || || || ||||| || || || | Sbjct 150384 CAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTAT 150443 Query 79724 CGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGA 79783 | ||||| || ||| |||||||| ||||| ||||| || || ||||||| Sbjct 150444 CATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGA 150503 Query 79784 AGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843 |||||||||||| || || |||||| | || | ||| | || ||||| | Sbjct 150504 AGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAGTTATATGTCTCGATCG 150563 Query 79844 CGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886 || | | ||| |||||||| ||||| || || || ||||| Sbjct 150564 CGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCAT 150606 Score = 125 bits (138), Expect = 8e-24 Identities = 469/728 (64%), Gaps = 22/728 (3%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 |||||| ||||||| | ||||| ||| ||||| | || || ||||| ||||| || Sbjct 149166 GAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTC-AAAGCACT 149224 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 ||||||| || | ||||| | ||| || || || ||||| || || || || || || | Sbjct 149225 CGTTGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGT 149284 Query 78626 TCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCG 78679 | || | ||||||| || | | |||| | | |||||||| ||| | | Sbjct 149285 TTCGCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAG 149344 Query 78680 CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACG 78739 | || ||||||||| ||| | |||||| | |||| | || || || | | | | Sbjct 149345 GGGTGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGG 149404 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 | | |||| || |||||| | | ||||| || | ||||| || ||||| | Sbjct 149405 TGGCATAAGGACCAAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAA 149464 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGA 78859 | || ||||| ||||||||| | |||| | || || | | || || Sbjct 149465 TGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGA 149524 Query 78860 GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGT 78919 | | ||| |||| || || || ||||| |||| |||| |||||||| | | | Sbjct 149525 GGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAAT 149584 Query 78920 TGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTAC 78979 |||| || ||| | ||| ||||| || ||||||| ||| ||||| | Sbjct 149585 TGCTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGC 149644 Query 78980 GCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT------GATTTCCTT 79033 | |||| ||| |||| ||||||| | || ||||||| | | ||| | Sbjct 149645 GAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGT 149704 Query 79034 TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA 79092 || ||||| ||||| ||| || || ||| |||||| || || ||| || || Sbjct 149705 CGACGAAAGCGGGTAGAGCA-AGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCG 149763 Query 79093 GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCT 79150 | ||| ||||| || ||||| | ||||| ||| ||| || || | |||||||| Sbjct 149764 GTGTACTCAATGATCTCAGTGCAGAGGTTAGA--ACTGCGGATAGTTCCCAAGTTCTTCT 149821 Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210 |||||||||| ||| || || ||||||||| ||| || || | || |||||| || Sbjct 149822 GGTTGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCT 149881 Query 79211 --GACTCT 79216 |||||| Sbjct 149882 GGGACTCT 149889 >seq244 Length=165466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| || || ||||| ||| || || ||||||||| || | || | || Sbjct 56454 CGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATC 56395 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||||||||||||||| || || | |||||||| ||||| || || Sbjct 56394 TTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCT 56335 Query 60102 CGGGACGAGGG 60112 || |||||||| Sbjct 56334 CGTGACGAGGG 56324 Score = 82.4 bits (90), Expect = 8e-11 Identities = 184/271 (68%), Gaps = 9/271 (3%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | ||| |||||| | | ||||||||||| ||| || ||| | Sbjct 56901 TGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTCTCCAAAGATC 56842 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCAT-TTCATCAAGATGGTCCTG 59708 | | || ||| |||||| | ||| ||||||||| || | |||||| ||||| Sbjct 56841 TCCACGACTGGAACAAGCGATTGAATGACGACGAGC-GCTTCTTCATCTCCCACGTCCTT 56783 Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG 59768 ||||||||||| || ||||| ||||| | || ||| | | | || | ||| | Sbjct 56782 GCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTC--GAGCGATTCAGCG 56725 Query 59769 G--ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTA 59826 | | || || | ||||||| || | ||||||| | |||| | | ||| | Sbjct 56724 GCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATGGAGAACA 56665 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGA 59857 ||||||| |||||||||||||| | ||||| Sbjct 56664 TCCACTCTGAGACGTACTCGCTTCTCATCGA 56634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521885962000