Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq164 161 1e-34
seq244 87.8 2e-12
>seq164
Length=316633
Score = 161 bits (178), Expect = 1e-34
Identities = 399/597 (67%), Gaps = 20/597 (3%)
Strand=Plus/Minus
Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGA----GACATA 19173
||||| || || || ||||| || ||||| ||| | |||||||||| ||||||
Sbjct 150606 ATGCGTGTAGCTGTAGGCATTCACGGCGAAGACATT----GAGTCCGCGATCGAGACATA 150551
Query 19174 CGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTAC 19233
|| ||| | || | |||||| || || |||||||||| |||||||| || ||
Sbjct 150550 TAACTACATGTCAAACAAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAGGCAC 150491
Query 19234 GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGG 19293
|| || ||||| || ||||| | | || |||||||| |||||||| ||
Sbjct 150490 CCCGTCACCACAAATGTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGG 150431
Query 19294 CATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT 19353
||||| || || || ||| || || || |||||| | || ||||| || |
Sbjct 150430 TATCTATGACACCCTGAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATTGGTCT 150371
Query 19354 CCAC-TGC-TCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGA--GTAG 19409
| ||| ||| |||||| | | ||| | | || || || |||| | |||
Sbjct 150370 GAATGTGCATCG--TATCCGCGCTACTGG--CTCCTAT--ATTGGCGGAACCAATGGTAC 150317
Query 19410 C--CGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCA 19467
| | | ||| || |||| ||||||||||||| ||||||||| || | |||||| | ||
Sbjct 150316 CTCCAATGGTCTCATCCCCATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCA 150257
Query 19468 GGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGT 19527
||| || || || ||| | ||||||||||| ||||||||||||||||| |||||
Sbjct 150256 GGGTGGGAATAAGCGTCCGGGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGT 150197
Query 19528 CATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCT 19587
| | ||||| || || | || || ||| | || ||| | || ||||||| |
Sbjct 150196 TTTCGGCTTCCTTGATCTAAGGAAAAATCATGGTAAGGAAGAGGTCCGTGCTCGCGACTT 150137
Query 19588 CTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATG 19647
||| || | ||||| || ||| | |||||| || || | || ||| |||||
Sbjct 150136 GTTCTACGCACTATGGATCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATG 150077
Query 19648 GCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
| ||| | ||||| ||||| |||||||| ||||||| || || || | |||
Sbjct 150076 GACTCTGTTCTGCCCCAACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTT 150020
Score = 127 bits (140), Expect = 2e-24
Identities = 380/583 (65%), Gaps = 4/583 (1%)
Strand=Plus/Plus
Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365
|| ||||| || |||| ||||| || |||| ||||| | ||| ||| || ||
Sbjct 150026 TCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTCCATTCGCCG 150085
Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425
| || | || || |||||| | ||| |||||||| || || ||| | ||||||
Sbjct 150086 TTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAACAAGTCGCGA 150145
Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485
||| | ||| || | || || || | || || || ||| | | | |||||||
Sbjct 150146 GCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAAACGTCGGCG 150205
Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545
||||| ||||| |||||||||||||| | |||| ||||| || ||||| | ||||
Sbjct 150206 TGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCCTGATCGACG 150265
Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605
|| || || ||||||||| | || ||||||||||| | || || | || | || ||
Sbjct 150266 TATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAGGTACCATTG 150325
Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTCCGATGCCCC 79663
|| ||| || | || | || || | | ||| ||| | | || || || |
Sbjct 150326 GTTCCGCCAATATAGGAGCCAGTAGCGCGGA--TACGATGCACATTCAGACCAATACCGC 150383
Query 79664 CGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGT 79723
| | |||||| || || || ||| || || || ||||| || || || |
Sbjct 150384 CAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCAATGCTAT 150443
Query 79724 CGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGA 79783
| ||||| || ||| |||||||| ||||| ||||| || || |||||||
Sbjct 150444 CATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTGTGGTGACGGGGTGCCTGCGTTGA 150503
Query 79784 AGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843
|||||||||||| || || |||||| | || | ||| | || ||||| |
Sbjct 150504 AGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAGTTATATGTCTCGATCG 150563
Query 79844 CGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCAT 79886
|| | | ||| |||||||| ||||| || || || |||||
Sbjct 150564 CGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCAT 150606
Score = 125 bits (138), Expect = 8e-24
Identities = 469/728 (64%), Gaps = 22/728 (3%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565
|||||| ||||||| | ||||| ||| ||||| | || || ||||| ||||| ||
Sbjct 149166 GAACTCACCGGCCAAGACACGGCGAGAGTAAATGTTTGAGGTATATGGCTC-AAAGCACT 149224
Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625
||||||| || | ||||| | ||| || || || ||||| || || || || || || |
Sbjct 149225 CGTTGTTTCCGAGAATCTGAGAGGTGGAAGCCGTTGGCATAGGGGCAACAAGGAGCGAGT 149284
Query 78626 TCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCG 78679
| || | ||||||| || | | |||| | | |||||||| ||| | |
Sbjct 149285 TTCGCACACCATGCTGAGCAATGTTGGCCTTCAATGAATCCCAGTCCCAAAGATCAGTAG 149344
Query 78680 CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACG 78739
| || ||||||||| ||| | |||||| | |||| | || || || | | | |
Sbjct 149345 GGGTGACGTTCCACATGTCGTATTGCAAGATACCTTGGGACACGGGAGAACCTTCGTAGG 149404
Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799
| | |||| || |||||| | | ||||| || | ||||| || ||||| |
Sbjct 149405 TGGCATAAGGACCAAGCTCCTTAGAAATCTCGCAGGATGCAGTGAGGGCAGCATGGTAAA 149464
Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGA 78859
| || ||||| ||||||||| | |||| | || || | | || ||
Sbjct 149465 TGGTTTCAAAGATCTGAGTGTTGAGCTTCCTAGCCTCTGGAGAATCAAAGGGCATGCGGA 149524
Query 78860 GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGT 78919
| | ||| |||| || || || ||||| |||| |||| |||||||| | | |
Sbjct 149525 GGGCAAGGAATGCATCAGCGAGACCTTGGACACCGAGGCCGATAGGTCGGTGCCTGAAAT 149584
Query 78920 TGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTAC 78979
|||| || ||| | ||| ||||| || ||||||| ||| ||||| |
Sbjct 149585 TGCTGCGGCGTGCCTCTTCGACGGGGTAGTGATTTACTTCGATGATTTTGTTTAGGTTGC 149644
Query 78980 GCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT------GATTTCCTT 79033
| |||| ||| |||| ||||||| | || ||||||| | | ||| |
Sbjct 149645 GAGTGAGCACCTGAGTGACCTCGTGGAGCTTCTGGAAATCATATTCGCCACGATGATAGT 149704
Query 79034 TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA 79092
|| ||||| ||||| ||| || || ||| |||||| || || ||| || ||
Sbjct 149705 CGACGAAAGCGGGTAGAGCA-AGAGAGCCCAAGTTGCATACCGCGACCTCATCTGGAGCG 149763
Query 79093 GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTCT 79150
| ||| ||||| || ||||| | ||||| ||| ||| || || | ||||||||
Sbjct 149764 GTGTACTCAATGATCTCAGTGCAGAGGTTAGA--ACTGCGGATAGTTCCCAAGTTCTTCT 149821
Query 79151 GGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCT 79210
|||||||||| ||| || || ||||||||| ||| || || | || |||||| ||
Sbjct 149822 GGTTGCTCTTGCGGTTGCATGCATCCTTGTAGAGCATATATGGGTTTCCAGTCTCAGTCT 149881
Query 79211 --GACTCT 79216
||||||
Sbjct 149882 GGGACTCT 149889
>seq244
Length=165466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
||||| || || ||||| ||| || || ||||||||| || | || | ||
Sbjct 56454 CGTCTTATCGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCATCCATC 56395
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
||||||||||| ||||||||||||||||| || || | |||||||| ||||| || ||
Sbjct 56394 TTCTGGCTCAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCCAATGAGCTCATCTCT 56335
Query 60102 CGGGACGAGGG 60112
|| ||||||||
Sbjct 56334 CGTGACGAGGG 56324
Score = 82.4 bits (90), Expect = 8e-11
Identities = 184/271 (68%), Gaps = 9/271 (3%)
Strand=Plus/Minus
Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652
|||| ||||| || | ||| |||||| | | ||||||||||| ||| || ||| |
Sbjct 56901 TGTACAAGAAGGCTGAAGCTTCTTTCTGGACTGCTGAGGAGATTGATCTCTCCAAAGATC 56842
Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCAT-TTCATCAAGATGGTCCTG 59708
| | || ||| |||||| | ||| ||||||||| || | |||||| |||||
Sbjct 56841 TCCACGACTGGAACAAGCGATTGAATGACGACGAGC-GCTTCTTCATCTCCCACGTCCTT 56783
Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG 59768
||||||||||| || ||||| ||||| | || ||| | | | || | ||| |
Sbjct 56782 GCCTTCTTCGCCGCATCCGATGGCATTGTCAACGAGAATTTGGTC--GAGCGATTCAGCG 56725
Query 59769 G--ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTA 59826
| | || || | ||||||| || | ||||||| | |||| | | ||| |
Sbjct 56724 GCGAAGTACAAGTCCCCGAGGCGCGTTGCTTCTACGGCTTTCAGATCATGATGGAGAACA 56665
Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGA 59857
||||||| |||||||||||||| | |||||
Sbjct 56664 TCCACTCTGAGACGTACTCGCTTCTCATCGA 56634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548521885962000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |