Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq164 156 5e-33 >seq164 Length=316633 Score = 156 bits (172), Expect = 5e-33 Identities = 354/521 (68%), Gaps = 10/521 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA-TCACCCTCAGAT 53325 || ||||| || || ||| |||| ||||| |||||||| || || ||||| || || Sbjct 150534 AAATACTTCACACATGCCTCGCCGACCCTCTTCAACGCAGGCACCCCGTCACCA-CAAAT 150476 Query 53326 GTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCT 53385 ||| |||||||| | | || |||||||| || || || ||||| || || || Sbjct 150475 GTCCTCTTGCTTCCTCATCGACATCAAGGATGATAGCATTGAAGGTATCTATGACACCCT 150416 Query 53386 CAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGC-TCGAAC 53443 ||| |||||| || |||||| | || ||||| ||| | | ||| ||| | Sbjct 150415 GAAGACTTGTGCCATGATTTCCAAGACTGCTGGCGGTATTGGTCTGAATGTGCATCGTA- 150357 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 |||| || | ||| | || || || || || | || |||| || | || Sbjct 150356 -TCCGCGCTACTGGCTCCTATATTGGCGGAACCAATGGTACCTCCAATGGTCTCATCCCC 150298 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||||||||||| ||||||||| || || |||||| | |||||||| ||||| | Sbjct 150297 ATGCTCCGCGTCTACAACAACACTGCACGATACGTCGATCAGGGTGGGAATAAGCGTCCG 150238 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | ||||||||||| |||||||| |||||||||||| || | | || || || || Sbjct 150237 GGTGCCTTCGCCATCTATCTCGAGCCATGGCACGCCGACGTTTTCGGCTTCCTTGATCTA 150178 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGA 53681 | ||||| ||| | |||||| | || ||| || ||| |||| ||| || || |||| Sbjct 150177 AGGAAAAATCATGGTAAGGAAGAGGTCCG-TGCTCGCGACTTGTTCTAC-GCACTATGGA 150120 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || ||| | |||||| | || | || ||| || ||| ||| | ||||| | Sbjct 150119 TCCCCGACTTGTTCATGAAGCGTGTCCAAGAGAACGGCGAATGGACTCTGTTCTGCCCCA 150060 Query 53742 ACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||| || |||||| | || || ||||| |||||| Sbjct 150059 ACGAAGCTCCTGGCCTCGCCGACGTTTATGGTGATGAGTTT 150019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213092915000