Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq9 187 3e-42
seq164 138 1e-27
seq382 111 2e-19
seq151 104 3e-17
>seq9
Length=355999
Score = 187 bits (206), Expect = 3e-42
Identities = 163/203 (80%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || || || || || ||||| ||| | ||| ||||| |
Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|||||||||||||||||||| |||||||||||||| ||||| | || || |||||||||
Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| ||||||| || ||| | | ||||| || |||| ||||||||||| ||||||
Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||||||||||||
Sbjct 45198 CTTGTCCTCCGTCTTCGCGGTGG 45176
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| || ||||||||||| ||||||
Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | || | || ||||||||||| ||||| || || || || |||
Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || ||||| || ||||| |||||||||| || || || ||||||| ||
Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || ||||| || | || ||||||| || |||||
Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGTCTCCGTGGTGG 44948
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || |||||||| || ||||| |||||||||||
Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | || | || || || || |||||||| || || || |||||
Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||||||||| || ||||||| || || || | ||||| ||
Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| |||||||| || ||||| | || | ||||| || || |||||
Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGGACA 44717
Score = 140 bits (154), Expect = 4e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
|||| || ||||| || || | || || ||||| || | ||| | ||| | |||
Sbjct 45663 TTACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGT 45604
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
| ||||| |||||||||||||| ||||| |||||||| ||||| | || || || || |
Sbjct 45603 CCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCA 45544
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
|||| ||||| || | ||| ||||| | ||||| || |||| |||||||||||||| |
Sbjct 45543 AGCAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTAC 45484
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||| | || ||||| |||||
Sbjct 45483 ATCTCGTCCTCCGCCTTCGTGGTGG 45459
>seq164
Length=316633
Score = 138 bits (152), Expect = 1e-27
Identities = 407/621 (66%), Gaps = 15/621 (2%)
Strand=Plus/Plus
Query 81131 ACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190
||||| ||| ||| || |||| |||| | || || | |||| | || ||||
Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059
Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAG 81247
| ||||| | ||| ||| ||| |||||||| ||| ||||||||| ||| |
Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGC---CGTTCTCTTGGACACGCTTCATGAACAAGTCGG 150116
Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
||||||| || ||| ||||| |||||| ||| || |||| || | ||| || ||
Sbjct 150117 GGATCCATAGTGCGTAGAACAAGTCGCGAGCA-CGGACCTCTTCCTTACCATGATTTTTC 150175
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
| | || || ||| | | | ||| || ||||||||||| ||||| | ||||| |
Sbjct 150176 CTTAGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCA 150235
Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
||| || | |||||||| | |||||| || ||||| ||| | || || | |
Sbjct 150236 CCCGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGC 150295
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG- 81482
|| ||||||| ||||| || ||| || || || | ||| || || | |||||
Sbjct 150296 ATGGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGG 150355
Query 81483 -CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541
|| ||| ||| ||||| || || || | ||| |||||| ||||| |
Sbjct 150356 ATACGATGCACATT--CAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT 150413
Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTG 81601
||| ||| ||||| || || || |||||||| | || ||||| | | ||| || |
Sbjct 150414 TCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGG 150473
Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661
|||| || || | ||| || ||||| || || || | || || |||| ||
Sbjct 150474 ACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATT 150533
Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721
||||||||| || ||| || || | || ||| || || |||||||| || |
Sbjct 150534 TGTTTGACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTA 150593
Query 81722 TAGCTACACGCATAAACATGT 81742
|||||||||||||| |||||
Sbjct 150594 CAGCTACACGCATAAGCATGT 150614
>seq382
Length=167612
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| || |||
Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| | ||||| || |||| ||||| || || || ||||| || |
Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466
Query 27619 CGTCTTCGCGGTGG 27632
|| || || |||||
Sbjct 145467 CGCCTGCGTGGTGG 145480
>seq151
Length=370960
Score = 104 bits (114), Expect = 3e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || || ||||||||||| ||||| || || || ||||| || ||
Sbjct 221027 AATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATC 220968
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| || || ||||| |||||||| | |||||||| | ||||| || ||||||||||
Sbjct 220967 TTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAG 220908
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| || | ||| | ||||| || || ||
Sbjct 220907 TCTACTCTCCACTTGGTCCTTCGTCTGCGTGGCGG 220873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307370226000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |