Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 187 3e-42 seq164 138 1e-27 seq382 111 2e-19 seq151 104 3e-17 >seq9 Length=355999 Score = 187 bits (206), Expect = 3e-42 Identities = 163/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || || || || || ||||| ||| | ||| ||||| | Sbjct 45378 ACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGTCA 45319 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||||||||||||||| |||||||||||||| ||||| | || || ||||||||| Sbjct 45318 AAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTAAG 45259 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| || ||| | | ||||| || |||| ||||||||||| |||||| Sbjct 45258 CAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTCAT 45199 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||||||||| Sbjct 45198 CTTGTCCTCCGTCTTCGCGGTGG 45176 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || ||||||||||| |||||| Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || | || ||||||||||| ||||| || || || || ||| Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || ||||| |||||||||| || || || ||||||| || Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| || | || ||||||| || ||||| Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGTCTCCGTGGTGG 44948 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || |||||||| || ||||| ||||||||||| Sbjct 44946 ATGCAGATTTTCGTTAAGACTCTGACTGGCAAGACAATCACTCTCGAGGTTGAGTCTTCA 44887 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || | || || || || |||||||| || || || ||||| Sbjct 44886 GACACCATCGACAACGTCAAATCGAAGATCCAAGATAAGGAGGGTATCCCACCTGACCAA 44827 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||||||||| || ||||||| || || || | ||||| || Sbjct 44826 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACGCTCTCCGACTACAAC 44767 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||||| || ||||| | || | ||||| || || ||||| Sbjct 44766 ATCCAGAAGGAATCAACCCTTCACTTGGTGCTCCGTCTGCGTGGCGGACA 44717 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 |||| || ||||| || || | || || ||||| || | ||| | ||| | ||| Sbjct 45663 TTACGGGAAAGACCATCACCTTGGAAGTCGAGTCCTCCGACACCATCGACAATGTAAAGT 45604 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | ||||| |||||||||||||| ||||| |||||||| ||||| | || || || || | Sbjct 45603 CCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCA 45544 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 |||| ||||| || | ||| ||||| | ||||| || |||| |||||||||||||| | Sbjct 45543 AGCAGCTCGAAGACGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTAC 45484 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||| | || ||||| ||||| Sbjct 45483 ATCTCGTCCTCCGCCTTCGTGGTGG 45459 >seq164 Length=316633 Score = 138 bits (152), Expect = 1e-27 Identities = 407/621 (66%), Gaps = 15/621 (2%) Strand=Plus/Plus Query 81131 ACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGT 81190 ||||| ||| ||| || |||| |||| | || || | |||| | || |||| Sbjct 150000 ACTTGTGGTAGAGTTCCTCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGT 150059 Query 81191 TAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAG 81247 | ||||| | ||| ||| ||| |||||||| ||| ||||||||| ||| | Sbjct 150060 TGGGGCAGAACAGAGTCCATTCGC---CGTTCTCTTGGACACGCTTCATGAACAAGTCGG 150116 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 ||||||| || ||| ||||| |||||| ||| || |||| || | ||| || || Sbjct 150117 GGATCCATAGTGCGTAGAACAAGTCGCGAGCA-CGGACCTCTTCCTTACCATGATTTTTC 150175 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 | | || || ||| | | | ||| || ||||||||||| ||||| | ||||| | Sbjct 150176 CTTAGATCAAGGAAGCCGAAAACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCA 150235 Query 81367 CCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 ||| || | |||||||| | |||||| || ||||| ||| | || || | | Sbjct 150236 CCCGGACGCTTATTCCCACCCTGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGC 150295 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG- 81482 || ||||||| ||||| || ||| || || || | ||| || || | ||||| Sbjct 150296 ATGGGGATGAGACCATTGGAGGTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGG 150355 Query 81483 -CACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541 || ||| ||| ||||| || || || | ||| |||||| ||||| | Sbjct 150356 ATACGATGCACATT--CAGACCAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCT 150413 Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTG 81601 ||| ||| ||||| || || || |||||||| | || ||||| | | ||| || | Sbjct 150414 TCAGGGTGTCATAGATACCTTCAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGG 150473 Query 81602 ACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAAC 81661 |||| || || | ||| || ||||| || || || | || || |||| || Sbjct 150474 ACATTTGTGGTGACGGGGTGCCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATT 150533 Query 81662 GGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGA 81721 ||||||||| || ||| || || | || ||| || || |||||||| || | Sbjct 150534 TGTTTGACATGTAGTTATATGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTA 150593 Query 81722 TAGCTACACGCATAAACATGT 81742 |||||||||||||| ||||| Sbjct 150594 CAGCTACACGCATAAGCATGT 150614 >seq382 Length=167612 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| || ||| Sbjct 145347 GACAAGGAGGGCATTCCCCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAG 145406 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| | ||||| || |||| ||||| || || || ||||| || | Sbjct 145407 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATCTCGTGCTC 145466 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 145467 CGCCTGCGTGGTGG 145480 >seq151 Length=370960 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || || ||||||||||| ||||| || || || ||||| || || Sbjct 221027 AATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATC 220968 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | |||||||| | ||||| || |||||||||| Sbjct 220967 TTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAG 220908 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| || | ||| | ||||| || || || Sbjct 220907 TCTACTCTCCACTTGGTCCTTCGTCTGCGTGGCGG 220873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307370226000