Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq196 89.7 4e-13 >seq196 Length=468221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 229/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| || | | ||||||||||| ||| | || |||| | | ||| | Sbjct 28869 GGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATT 28928 Query 30179 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG-TACT 30236 | || || || || || || || ||||| ||| ||||| || || ||| | || | Sbjct 28929 AC-TTCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCG-TCGTGGCCGCGGTATT 28986 Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296 | || |||||||| | ||| ||||| || || || ||||| | ||| || ||||| || Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046 Query 30297 GCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30355 | || |||| | |||| | ||| | ||| |||||| ||||||||||||| | Sbjct 29047 GTGAGA-GCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATT 29105 Query 30356 CCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30415 || || |||||| ||| ||| |||||| ||| || ||||| ||||| || | Sbjct 29106 CCGGCGTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCG 29165 Query 30416 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||||| || || | |||||| || |||||||| Sbjct 29166 ATTACGGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGG 29206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308295439100