Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq9 109 5e-19
seq151 93.3 4e-14
>seq9
Length=355999
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || |||||| | || |||||||| || || | ||
Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || ||| ||| ||||| |||||||| || || || || |||||
Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||||| || || | || || | || | || || ||||||
Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| || | || ||||| ||||| | || ||||| ||
Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGTCTCCGTGGTGGTAT 44945
Score = 105 bits (116), Expect = 6e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069
||||||||||| | || || || ||||| ||| | || || | || || | || ||
Sbjct 45380 TGACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGT 45321
Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129
||||||||| ||||| || ||||| || || || |||||||| || || | ||| || |
Sbjct 45320 CAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTA 45261
Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189
| ||| |||| || | ||| | ||||| |||||||| || ||||| || ||| | |
Sbjct 45260 AGCAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTC 45201
Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| | || | ||| | || ||||| ||
Sbjct 45200 ATCTTGTCCTCCGTCTTCGCGGTGGTAT 45173
>seq151
Length=370960
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || |||||||| || ||||| || || ||||||||||| | || | |||||||||
Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || ||| | ||| | ||||| |||||||| ||||||||||| || | ||
Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| | ||| |||| || || ||
Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGGTAT 220870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434916089496000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |