Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq151 93.3 4e-14 >seq9 Length=355999 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || |||||||| || || | || Sbjct 45174 ATGCAAATCTTCGTCAAGACACTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCATCG 45115 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||| ||||| |||||||| || || || || ||||| Sbjct 45114 GATACCATCGACAACGTAAAATCAAAGATTCAGGACAAAGAGGGTATCCCGCCGGATCAG 45055 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| || || | || || | || | || || |||||| Sbjct 45054 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACTCTGTCAGACTACAAC 44995 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || ||||| ||||| | || ||||| || Sbjct 44994 ATCCAAAAGGAGTCAACTCTGCACTTGGTGCTGCGTCTCCGTGGTGGTAT 44945 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || || ||||| ||| | || || | || || | || || Sbjct 45380 TGACCGGCAAGACCATCACCCTCGAAGTCGAATCCTCTGATACCATCGACAATGTGAAGT 45321 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||||||||| ||||| || ||||| || || || |||||||| || || | ||| || | Sbjct 45320 CAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAACAGCGATTGATCTTCGCTGGTA 45261 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| |||| || | ||| | ||||| |||||||| || ||||| || ||| | | Sbjct 45260 AGCAACTGGAGGATGGCCGCACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTTC 45201 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | ||| | || ||||| || Sbjct 45200 ATCTTGTCCTCCGTCTTCGCGGTGGTAT 45173 >seq151 Length=370960 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| || ||||| || || ||||||||||| | || | ||||||||| Sbjct 221015 AAGATCCAAGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCCGGCAAG 220956 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| | ||| | ||||| |||||||| ||||||||||| || | || Sbjct 220955 CAGCTCGAGGACGGCCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 220896 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| |||| || || || Sbjct 220895 TTGGTCCTTCGTCTGCGTGGCGGTAT 220870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916089496000