Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq196 96.9 3e-15
>seq196
Length=468221
Score = 96.9 bits (106), Expect = 3e-15
Identities = 202/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783
|| ||||||||||||| || ||||||| || ||||| ||||| ||||||
Sbjct 28808 CGAGACGTAGAATTGGGCGAACATGTGGCAAGGCGGGAGGGCCATTTTCTTGAGATCGGC 28867
Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843
|||||||||||| | | | ||| | | ||| | || || | || | |||||||
Sbjct 28868 CGGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGAT 28927
Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902
|| | | || || ||||| | || || |||| || || || ||| || || || |
Sbjct 28928 TACTT-CGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCGTCGTGGCCGCGGTATT 28986
Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962
| || || || |||| ||| ||||| || ||||| || || |||||||| || || |
Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046
Query 6963 ATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|| || ||| |||| ||| || ||| || || |||| |||||||||||||
Sbjct 29047 GTGAGAGCCCTACGCT-GTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTT 29101
Score = 96.9 bits (106), Expect = 3e-15
Identities = 202/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCG 34386
||||||||||||| |||| || || ||| || ||| |||| ||| || || |
Sbjct 29101 AAGATCTGGGACGGCAACGGCTCCCGGTCCTTCCTCGAC-AGCGTAGGGCTCTCACACCA 29043
Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| || |||||||| || || ||||| || ||||| ||| |||| || || || || ||
Sbjct 29042 CGAAGAAGGCGACTTAGGACCCGTCTATGGCTTCCAATGGCGACATTTCGGCGCCGAATA 28983
Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCG 34505
|| || ||| || || || |||| || || | ||||| || || | | || ||||
Sbjct 28982 CCGCGGCCACGACGCAGATTACACGGGGCAAGGCGTCGACCAACTCGCCG-AAGTAATCG 28924
Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565
||| | || | || || | ||| | | ||| | | | |||||||||||| |
Sbjct 28923 ACAAACTAAAACACAAACCCTACGACCGGCGCATCATCCTCTCAGCGTGGAACCCGGCCG 28864
Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621
||||| ||||| ||||| || ||||||| || ||||||||||||| ||
Sbjct 28863 ATCTCAAGAAAATGGCCCTCCCGCCTTGCCACATGTTCGCCCAATTCTACGTCTCG 28808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448260018606000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |