Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq196 96.9 3e-15 >seq196 Length=468221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||||||| || ||||||| || ||||| ||||| |||||| Sbjct 28808 CGAGACGTAGAATTGGGCGAACATGTGGCAAGGCGGGAGGGCCATTTTCTTGAGATCGGC 28867 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 |||||||||||| | | | ||| | | ||| | || || | || | ||||||| Sbjct 28868 CGGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGAT 28927 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 || | | || || ||||| | || || |||| || || || ||| || || || | Sbjct 28928 TACTT-CGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCGTCGTGGCCGCGGTATT 28986 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 | || || || |||| ||| ||||| || ||||| || || |||||||| || || | Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046 Query 6963 ATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || || ||| |||| ||| || ||| || || |||| ||||||||||||| Sbjct 29047 GTGAGAGCCCTACGCT-GTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTT 29101 Score = 96.9 bits (106), Expect = 3e-15 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCCATCTCG 34386 ||||||||||||| |||| || || ||| || ||| |||| ||| || || | Sbjct 29101 AAGATCTGGGACGGCAACGGCTCCCGGTCCTTCCTCGAC-AGCGTAGGGCTCTCACACCA 29043 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || |||||||| || || ||||| || ||||| ||| |||| || || || || || Sbjct 29042 CGAAGAAGGCGACTTAGGACCCGTCTATGGCTTCCAATGGCGACATTTCGGCGCCGAATA 28983 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCG 34505 || || ||| || || || |||| || || | ||||| || || | | || |||| Sbjct 28982 CCGCGGCCACGACGCAGATTACACGGGGCAAGGCGTCGACCAACTCGCCG-AAGTAATCG 28924 Query 34506 ACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 ||| | || | || || | ||| | | ||| | | | |||||||||||| | Sbjct 28923 ACAAACTAAAACACAAACCCTACGACCGGCGCATCATCCTCTCAGCGTGGAACCCGGCCG 28864 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621 ||||| ||||| ||||| || ||||||| || ||||||||||||| || Sbjct 28863 ATCTCAAGAAAATGGCCCTCCCGCCTTGCCACATGTTCGCCCAATTCTACGTCTCG 28808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260018606000