Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9 156 1e-32
seq350 109 1e-18
seq151 105 2e-17
seq176 96.9 8e-15
seq117 86.0 1e-11
>seq9
Length=355999
Score = 156 bits (172), Expect = 1e-32
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | |||||||| || || |||||||| || |||| ||||| |||| ||| ||
Sbjct 45182 CGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTG 45241
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || ||||| ||||||||||| | ||| |||||||| || ||||| ||
Sbjct 45242 CGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCC 45301
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || || ||| ||||||| |||||||| || |||| ||| || || |
Sbjct 45302 TCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGG 45361
Query 225673 GTGATCGTCTTGCCCGTCA 225691
||||| |||||||| ||||
Sbjct 45362 GTGATGGTCTTGCCGGTCA 45380
Score = 145 bits (160), Expect = 2e-29
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||||| || || ||||||||||| || |||| ||||| |||| || ||
Sbjct 45464 ACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 45523
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| |||||||| || |||||||| | || |||||||| || ||||| ||
Sbjct 45524 GCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCC 45583
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| ||||| || ||| ||| ||||||||||| |||| || || || ||
Sbjct 45584 CTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAA 45643
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| ||||| |||||
Sbjct 45644 GGTGATGGTCTTTCCCGT 45661
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || ||||| || |||| ||||| |||| | |||| |||||
Sbjct 44735 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCC 44794
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| |||||||| || || || |||||||| || || ||||| ||||| |||
Sbjct 44795 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCT 44854
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| || || |||||||||||||| | || || || | ||||| |||
Sbjct 44855 TGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTC 44914
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| ||| || | ||| | |||||
Sbjct 44915 TTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
>seq350
Length=9217
Score = 109 bits (120), Expect = 1e-18
Identities = 183/260 (70%), Gaps = 5/260 (2%)
Strand=Plus/Minus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503
||||||||||||| || ||| | ||| | | |||||| |||||| | ||||
Sbjct 5083 TTATATTTAATATATGCATTATTTGCAGGTTTAGTGGGTACTGCTTTTTCTGTACTTATT 5024
Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563
|| |||||||| | | || ||| |||| ||| | || | ||| |||| | || |||
Sbjct 5023 AGACTAGAATTATCAGGACCTGGTGTTCAA-TAT--ATTGCTGATAACCAATTATATAAC 4967
Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623
|||||| || || ||||| | | ||||| || ||| | |||||||| | | | |||
Sbjct 4966 AGTATTATAACTGCTCATGCTATAATAATGATATTTTTTATGGTTATGCCAGCTTTAATA 4907
Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT-GGTGCTCCTGATATGGCTTTTCC 7682
|| ||||| || |||| | |||| ||| |||| || | ||||||||||| || ||
Sbjct 4906 GGAGGTTTTGGTAATTTTCTACTTCCATTAG-GATTAGGAGGTCCTGATATGGGATTCCC 4848
Query 7683 AAGGCTTAACAATATAAGTT 7702
|| || |||||||| ||||
Sbjct 4847 TAGACTAAACAATATTAGTT 4828
>seq151
Length=370960
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||||||||| || || ||||||| ||||| |||| | || | || ||
Sbjct 220888 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 220947
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || ||||| || || ||||| || |||||||||
Sbjct 220948 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCT 221007
Query 225622 TGGATCTT 225629
||||||||
Sbjct 221008 TGGATCTT 221015
>seq176
Length=447728
Score = 96.9 bits (106), Expect = 8e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588
|||| ||||| | || | ||| | || || || |||||||||||| ||||||| ||
Sbjct 44128 TGGATGTTGTATTTGGATAGAGTGCGTCCTTCCTCGAGCTGCTTCCCACCGAAGATGAGA 44069
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648
||||| || |||| || || || ||| | || ||||||||| | ||| | |||||
Sbjct 44068 CGTTGCTGATCGGCGGGTATGCCCTCCATATCCTGGATCTTTGACATCATATTCTCGATC 44009
Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| | |||| ||||||| || || ||||||||||| ||
Sbjct 44008 GTGCCGGAGGACTCCACGTTCAAGGTTATCGTCTTGCCTGT 43968
>seq117
Length=1393181
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|||| |||||| ||||| ||| ||| |||||||| || || ||||| ||||| ||||||
Sbjct 69705 TCTAACTGCTTTCCAGCATAGAGAAGGCGTTGTTGATCAGGTGGAATTCCTTCTTTGTCT 69764
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656
||||| || |||| ||| | || || ||||||||
Sbjct 69765 TGGATTTTCTGCTGCACTTCCTCTATTGTGTCTGA 69799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192524706294950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |