Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9 156 1e-32 seq350 109 1e-18 seq151 105 2e-17 seq176 96.9 8e-15 seq117 86.0 1e-11 >seq9 Length=355999 Score = 156 bits (172), Expect = 1e-32 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||| || || |||||||| || |||| ||||| |||| ||| || Sbjct 45182 CGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTG 45241 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||| ||||||||||| | ||| |||||||| || ||||| || Sbjct 45242 CGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCC 45301 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || ||| ||||||| |||||||| || |||| ||| || || | Sbjct 45302 TCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGG 45361 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 45362 GTGATGGTCTTGCCGGTCA 45380 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || || ||||||||||| || |||| ||||| |||| || || Sbjct 45464 ACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 45523 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| |||||||| || |||||||| | || |||||||| || ||||| || Sbjct 45524 GCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCC 45583 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||| ||| ||||||||||| |||| || || || || Sbjct 45584 CTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGACTTCCAA 45643 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 45644 GGTGATGGTCTTTCCCGT 45661 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| || |||| ||||| |||| | |||| ||||| Sbjct 44735 AGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCC 44794 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || |||||||| || || ||||| ||||| ||| Sbjct 44795 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCT 44854 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || |||||||||||||| | || || || | ||||| ||| Sbjct 44855 TGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTC 44914 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| ||| || | ||| | ||||| Sbjct 44915 TTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 >seq350 Length=9217 Score = 109 bits (120), Expect = 1e-18 Identities = 183/260 (70%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATA 7503 ||||||||||||| || ||| | ||| | | |||||| |||||| | |||| Sbjct 5083 TTATATTTAATATATGCATTATTTGCAGGTTTAGTGGGTACTGCTTTTTCTGTACTTATT 5024 Query 7504 AGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAAC 7563 || |||||||| | | || ||| |||| ||| | || | ||| |||| | || ||| Sbjct 5023 AGACTAGAATTATCAGGACCTGGTGTTCAA-TAT--ATTGCTGATAACCAATTATATAAC 4967 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 |||||| || || ||||| | | ||||| || ||| | |||||||| | | | ||| Sbjct 4966 AGTATTATAACTGCTCATGCTATAATAATGATATTTTTTATGGTTATGCCAGCTTTAATA 4907 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT-GGTGCTCCTGATATGGCTTTTCC 7682 || ||||| || |||| | |||| ||| |||| || | ||||||||||| || || Sbjct 4906 GGAGGTTTTGGTAATTTTCTACTTCCATTAG-GATTAGGAGGTCCTGATATGGGATTCCC 4848 Query 7683 AAGGCTTAACAATATAAGTT 7702 || || |||||||| |||| Sbjct 4847 TAGACTAAACAATATTAGTT 4828 >seq151 Length=370960 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||||||| || || ||||||| ||||| |||| | || | || || Sbjct 220888 AGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 220947 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| || || ||||| || ||||||||| Sbjct 220948 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCT 221007 Query 225622 TGGATCTT 225629 |||||||| Sbjct 221008 TGGATCTT 221015 >seq176 Length=447728 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| ||||| | || | ||| | || || || |||||||||||| ||||||| || Sbjct 44128 TGGATGTTGTATTTGGATAGAGTGCGTCCTTCCTCGAGCTGCTTCCCACCGAAGATGAGA 44069 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 ||||| || |||| || || || ||| | || ||||||||| | ||| | ||||| Sbjct 44068 CGTTGCTGATCGGCGGGTATGCCCTCCATATCCTGGATCTTTGACATCATATTCTCGATC 44009 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| | |||| ||||||| || || ||||||||||| || Sbjct 44008 GTGCCGGAGGACTCCACGTTCAAGGTTATCGTCTTGCCTGT 43968 >seq117 Length=1393181 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| |||||| ||||| ||| ||| |||||||| || || ||||| ||||| |||||| Sbjct 69705 TCTAACTGCTTTCCAGCATAGAGAAGGCGTTGTTGATCAGGTGGAATTCCTTCTTTGTCT 69764 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGA 225656 ||||| || |||| ||| | || || |||||||| Sbjct 69765 TGGATTTTCTGCTGCACTTCCTCTATTGTGTCTGA 69799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524706294950