Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq196 89.7 4e-13 >seq196 Length=468221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 29591 CTCCT-GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAG 29649 ||||| |||||| | ||| || || || | | || || | |||| || || |||| Sbjct 28508 CTCCTTGTTTATACGCAGGGTAGGGAAATCTTTAGGTTCGCGGTCGATTTGGATTTTCAG 28567 Query 29650 CGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGG 29709 | || |||||||| ||||||||||| || || |||| |||||| || ||||| Sbjct 28568 GGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTGAAGGTCCCCGG 28627 Query 29710 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29769 || || |||||| || | ||||| || || | || |||| ||||||||| || Sbjct 28628 CGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAGGCGATGTTGAA 28687 Query 29770 GGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAG 29808 ||| | ||||| |||||||| | || | |||||||| Sbjct 28688 GGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161096201550