Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq196 89.7 4e-13 >seq196 Length=468221 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 27085 CTCCT-GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAG 27143 ||||| |||||| | ||| || || || | | || || | |||| || | ||||| Sbjct 28508 CTCCTTGTTTATACGCAGGGTAGGGAAATCTTTAGGTTCGCGGTCGATTTGGATTTTCAG 28567 Query 27144 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 27203 | || ||||| || ||||||||||| ||||| |||| |||||| || ||||| Sbjct 28568 GGCGTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCCATTGTGTGGGTGAAGGTCCCCGG 28627 Query 27204 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 27263 || || |||||| || | ||||| || || | || |||| ||||||||| || Sbjct 28628 CGTAAGATCGCAGACGTGGGCGAGCATGTGGGTTAGTAAAGCGTAGGAGGCGATGTTGAA 28687 Query 27264 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 27302 ||| | ||||| |||||||| | || | |||||||| Sbjct 28688 GGGGATGCCGAGGCCCATGTCGCAGGAGCGTTGGTAGAG 28726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 229/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| || | | ||||||||||| ||| | || |||| | | ||| | Sbjct 28869 GGGTTCCACGCTGAGAGGATGATGCGCCGGTCGTAGGGTTTGTGTTTTAGTTTGTCGATT 28928 Query 27445 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTG-TACT 27502 | || || || || || || || ||||| ||| ||| | || || ||| | || | Sbjct 28929 AC-TTCGGCGAGTTGGTCGACGCCTTGCCCCGTGTAATCTGCG-TCGTGGCCGCGGTATT 28986 Query 27503 CTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 27562 | || |||||||| | ||||||||| || || || ||||| | ||| || ||||| || Sbjct 28987 CGGCGCCGAAATGTCGCCATTGGAAGCCATAGACGGGTCCTAAGTCGCCTTCTTCGTGGT 29046 Query 27563 GCTCGAAGCCCCTCT-TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 27621 | || |||| | |||| | ||| | ||| |||||| ||||||||||||| | Sbjct 29047 GTGAGA-GCCCTACGCTGTCGAGGAAGGACCGGGAGCCGTTGCCGTCCCAGATCTTGATT 29105 Query 27622 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 27681 || || |||||| ||| ||| |||||| ||| || ||||| ||||| || | Sbjct 29106 CCGGCGTCTGAGAGCGGTTTTGAGGTTGTGGTGCCTGCGATAAACCAGAGCAGTTCGCCG 29165 Query 27682 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | ||||| || || | |||||| || |||||||| Sbjct 29166 ATTACGGCGCGGAGGAACACACGCTTGGTTGTTAGGAGGGG 29206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505286068175