Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq164 183 4e-41 >seq164 Length=316633 Score = 183 bits (202), Expect = 4e-41 Identities = 589/902 (65%), Gaps = 18/902 (2%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| ||||| || |||| || | | ||||| ||| || ||||| | || | | Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || || | || | || || ||||| || | || || |||||||| || || Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 | || || | | ||||| || || ||| || | ||||| || || | | | Sbjct 150137 AAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAA 150196 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | || | |||||||| || ||||| || || | | || || || ||||| || ||| Sbjct 150197 ACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCC 150256 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 ||||| | |||| || ||||| || || || | | ||| || || | ||| || || Sbjct 150257 TGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAG 150316 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA--CTAATGGATATCC 78282 || ||||| ||||| |||||| ||| | ||||| ||| | | || | | | Sbjct 150317 GTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGA--C 150374 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || || || || |||| || || | || ||| |||| || || |||||||| | Sbjct 150375 CAATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTT 150434 Query 78343 CTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT- 78401 | || || |||||| | |||| | || || || |||||||| || ||| | | Sbjct 150435 CAATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTG-TGGTGACGGGGTG 150493 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAA-GTAGATTGTA 78460 ||||| || || | ||||| || ||||| || || |||| | || | |||| || || Sbjct 150494 CCTGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATA 150552 Query 78461 TGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACAT 78520 ||| || || || || || ||||| ||||| ||||| ||||||||||| | ||| Sbjct 150553 TGTCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCAT 150612 Query 78521 ATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 || ||||| | |||| | ||| ||| ||| | | || ||||||| ||| | || Sbjct 150613 GTGTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGT 150672 Query 78581 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGT 78638 || ||||| || | | || ||||| || | || || | || | || ||||| Sbjct 150673 CTTGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGA 150730 Query 78639 TTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTTGAAATAATAGGAGATCGTACA 78698 | |||| || ||| |||||||||||||| || | || || ||||| || Sbjct 150731 TCATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTG 150790 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCA--CTA-AATAGtttt 78755 || || || || |||||||| | | | ||| |||| || | | ||| | || Sbjct 150791 TGGTTCTTGGGGTTGACATAGTTGTAGAGA---TCCGATACAACAGCCGAGAATTGCTTC 150847 Query 78756 tttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGA 78815 || || | |||||||| || || || || || | ||| || || |||||||| |||||| Sbjct 150848 TTGGTCTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGA 150907 Query 78816 TG 78817 || Sbjct 150908 TG 150909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665109572000