Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq164 183 4e-41
>seq164
Length=316633
Score = 183 bits (202), Expect = 4e-41
Identities = 583/897 (65%), Gaps = 8/897 (1%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
||||| ||||| || |||| || | | |||||| ||| || || || | || | |
Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076
Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639
|| || || | || | || || ||||| || | || || |||||||| || ||
Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136
Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699
| || || | | ||||| || || ||| || | ||||| ||||| | | |
Sbjct 150137 AAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAA 150196
Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759
| || | |||||||| || ||||| || || | ||||||| || ||||| || |||
Sbjct 150197 ACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCC 150256
Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819
||||| | |||| |||||||| || || || | | ||| || || | || || ||
Sbjct 150257 TGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAG 150316
Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879
|||||||| ||||| |||||| ||| || || ||| | | | || ||
Sbjct 150317 GTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCA 150376
Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939
|| || || || | || || || | ||||| |||| ||||||||||| || ||
Sbjct 150377 ATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCA 150436
Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTTCC 76998
|| ||||||||| | |||| | || || || |||||||| || ||| || ||
Sbjct 150437 ATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTG-TGGTGACGGGGTGCC 150495
Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057
||| || || | || || || ||||| ||||| |||| | || | |||| || ||||
Sbjct 150496 TGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATATG 150554
Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117
| || || | | || || || ||||| |||||||| |||||||| | ||| |
Sbjct 150555 TCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGT 150614
Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177
| ||||| ||||| || ||| ||| ||| | | || ||||||| ||| | || |
Sbjct 150615 GTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCT 150674
Query 77178 TAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235
| ||||| || | | || ||||| || | || || | || |||| ||||| |
Sbjct 150675 TGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGATC 150732
Query 77236 GTCCTTATATTTGGTAACAATATCCATGACAGTGGTAGAAATAATTGGAGATCGTATTCC 77295
|| | ||| |||||||||||||| || |||| || || || || |
Sbjct 150733 ATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTGTG 150792
Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355
|| || || || |||||||| | | || | || | ||| | || || ||
Sbjct 150793 GTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCTTGGT 150852
Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412
| |||||||| ||||| ||||| || | || || || || ||||||||||||||
Sbjct 150853 CTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGATG 150909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712930612536000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |