Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq164 183 4e-41 >seq164 Length=316633 Score = 183 bits (202), Expect = 4e-41 Identities = 583/897 (65%), Gaps = 8/897 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| ||||| || |||| || | | |||||| ||| || || || | || | | Sbjct 150017 TCAAACTCATCACCATAAACGTCGGCGAGGCCAGGAGCTTCGTTGGGGCAGAACAGAGTC 150076 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || || || | || | || || ||||| || | || || |||||||| || || Sbjct 150077 CATTCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGGATCCATAGTGCGTAGAAC 150136 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 | || || | | ||||| || || ||| || | ||||| ||||| | | | Sbjct 150137 AAGTCGCGAGCACGGACCTCTTCCTTACCATGATTTTTCCTTAGATCAAGGAAGCCGAAA 150196 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | || | |||||||| || ||||| || || | ||||||| || ||||| || ||| Sbjct 150197 ACGTCGGCGTGCCATGGCTCGAGATAGATGGCGAAGGCACCCGGACGCTTATTCCCACCC 150256 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | |||| |||||||| || || || | | ||| || || | || || || Sbjct 150257 TGATCGACGTATCGTGCAGTGTTGTTGTAGACGCGGAGCATGGGGATGAGACCATTGGAG 150316 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 |||||||| ||||| |||||| ||| || || ||| | | | || || Sbjct 150317 GTACCATTGGTTCCGCCAATATAGGAGCCAGTAGCGCGGATACGATGCACATTCAGACCA 150376 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || || || | ||||| |||| ||||||||||| || || Sbjct 150377 ATACCGCCAGCAGTCTTGGAAATCATGGCACAAGTCTTCAGGGTGTCATAGATACCTTCA 150436 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA-ACAGTTCC 76998 || ||||||||| | |||| | || || || |||||||| || ||| || || Sbjct 150437 ATGCTATCATCCTTGATGTCGATGAGGAAGCAAGAGGACATTTG-TGGTGACGGGGTGCC 150495 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATG 77057 ||| || || | || || || ||||| ||||| |||| | || | |||| || |||| Sbjct 150496 TGCGTTGAAGAGGGTCGGCGAGGCATGTGTGAAGTATTTGTTTGACATGTAG-TTATATG 150554 Query 77058 TTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATAT 77117 | || || | | || || || ||||| |||||||| |||||||| | ||| | Sbjct 150555 TCTCGATCGCGGACTCAATGTCTTCGCCGTGAATGCCTACAGCTACACGCATAAGCATGT 150614 Query 77118 GCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 77177 | ||||| ||||| || ||| ||| ||| | | || ||||||| ||| | || | Sbjct 150615 GTTGAGGACGTTCAGCAACCTTGCCATTGATTCTGAGCAGGTATGATCGTTCAAGGGTCT 150674 Query 77178 TAAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | ||||| || | | || ||||| || | || || | || |||| ||||| | Sbjct 150675 TGAAACCGAAGAACTGATAGTTGAAA--TCACGGTCATACACGATGGCCGAGTTTAGATC 150732 Query 77236 GTCCTTATATTTGGTAACAATATCCATGACAGTGGTAGAAATAATTGGAGATCGTATTCC 77295 || | ||| |||||||||||||| || |||| || || || || | Sbjct 150733 ATCTGCGTGTTTCTGCACAATATCCATGACTGTCTTAGATATCATAGGTTGGTGTTTGTG 150792 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 || || || || |||||||| | | || | || | ||| | || || || Sbjct 150793 GTTCTTGGGGTTGACATAGTTGTAGAGATCCGATACAACAGCCGAGAATTGCTTCTTGGT 150852 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATG 77412 | |||||||| ||||| ||||| || | || || || || |||||||||||||| Sbjct 150853 CTGTTTGTGTAGGTTCGAAACGGCAATACGTGCGGCGAGTATAGCATAGTCAGGATG 150909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930612536000