Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 2e-22
>seq9
Length=355999
Score = 122 bits (134), Expect = 2e-22
Identities = 155/210 (74%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| |||||||||||||| || | | ||||| ||||| || |
Sbjct 44968 CAAG-TGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGA 45026
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||| ||||| | | |||||| |||| || ||| || || || || ||
Sbjct 45027 GCTGCTTT--CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTG 45084
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
||| ||| ||| || | || | | | || || ||| || |||||||| || || ||
Sbjct 45085 AATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTT 45144
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| ||||| ||||| ||||||| |||||
Sbjct 45145 GCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 114 bits (126), Expect = 3e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || || || ||||||||||| |||| | |||| ||||| || |
Sbjct 44740 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAA 44798
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || ||||| || || | ||| ||||| | | ||| || ||||| ||||| |
Sbjct 44799 GCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGA 44858
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||||||| ||| || || ||||| || || ||||
Sbjct 44859 TCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGC 44918
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || |||||||| ||||| | ||||||
Sbjct 44919 CAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 89.7 bits (98), Expect = 1e-12
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||||||||| || || || || ||||||||||| |||| || || | |||||
Sbjct 45190 GAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATC 45249
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || |||||||| | | ||| ||||| | | || || ||||| ||
Sbjct 45250 CTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTC 45309
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||||||| || ||| | || | | | || || || ||||| || || || ||
Sbjct 45310 CTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGT 45369
Query 152072 TTTGCCCGT 152080
||||| ||
Sbjct 45370 CTTGCCGGT 45378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153814517085175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |