Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 122 2e-22 >seq9 Length=355999 Score = 122 bits (134), Expect = 2e-22 Identities = 155/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| || | | ||||| ||||| || | Sbjct 44968 CAAG-TGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGACAGAGTTCGGCCATCCTCGA 45026 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| | | |||||| |||| || ||| || || || || || Sbjct 45027 GCTGCTTT--CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATACCCTCTTTGTCCTG 45084 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| ||| ||| || | || | | | || || ||| || |||||||| || || || Sbjct 45085 AATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGACCTCAAGAGTGATGGTCTT 45144 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| ||||| ||||||| ||||| Sbjct 45145 GCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| | |||| ||||| || | Sbjct 44740 CAAG-TGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGCGTTCGGCCATCCTCAA 44798 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | ||| ||||| | | ||| || ||||| ||||| | Sbjct 44799 GCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGGATACCCTCCTTATCTTGGA 44858 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||||||| ||| || || ||||| || || |||| Sbjct 44859 TCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACCTCGAGAGTGATTGTCTTGC 44918 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||| | |||||| Sbjct 44919 CAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||||||||| || || || || ||||||||||| |||| || || | ||||| Sbjct 45190 GAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATC 45249 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| | | ||| ||||| | | || || ||||| || Sbjct 45250 CTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTC 45309 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| || ||| | || | | | || || || ||||| || || || || Sbjct 45310 CTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGT 45369 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 45370 CTTGCCGGT 45378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153814517085175