Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9 188 1e-42 seq151 111 3e-19 seq382 105 1e-17 seq244 89.7 1e-12 seq176 86.0 1e-11 >seq9 Length=355999 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || |||| || | || ||| || |||||||||||||| | Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| || || || || || || || | ||| ||||||||| || Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| ||||||||||| | ||| ||| | ||||| ||||| |||| || || Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || |||| |||||||||||| |||||||| Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || ||||||||||||||||| | Sbjct 44947 ACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGA 45006 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||||||||||||||| || || || ||| Sbjct 45007 CAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGG 45066 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| ||||| || ||||||| ||||||| | ||||| || ||||| | ||||| Sbjct 45067 GATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 159 bits (176), Expect = 7e-34 Identities = 161/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| || || || || || ||||| | ||| ||| || |||||||||||||| | Sbjct 45175 ACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 45234 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| |||||||||||||| ||||| || || || |||||||| || |||||||| | Sbjct 45235 CAAG-GTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAG 45293 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| || || |||| || || | ||||| || || || | ||||| Sbjct 45294 GAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGA 45353 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||||| ||||| ||||| || |||| Sbjct 45354 CTTCGAGGGTGATGGTCTTGCCGGTCA 45380 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||||| ||| ||| || |||||||||||||| | Sbjct 45458 ACCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 45517 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || || || || || || |||||||| || |||||||| || Sbjct 45518 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGG 45577 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| ||||| || | ||||| | ||||| ||||| || | ||||| Sbjct 45578 AATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGAC 45637 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||| | ||||| ||||| ||||| Sbjct 45638 TTCCAAGGTGATGGTCTTTCCCGT 45661 >seq151 Length=370960 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| ||||| |||| || | || || ||||||||||||||||| | Sbjct 220872 ACCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 220931 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || ||||| ||||||| || ||||| || || Sbjct 220932 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGG 220991 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 ||| |||||||||||||||||||| Sbjct 220992 AATGCCCTCCTTGTCTTGGATCTT 221015 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 315684 CTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATC 315743 ||| || |||| | || ||||||||| || ||||| | ||||||| ||||| || Sbjct 189732 CTTCAGAGCCTTGGACAAAGCACCGAGAGAGTCACGGTCGAGGTAGTTGGTTGGCTCGTC 189673 Query 315744 AAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGATAACGAGCTTTAGTTTTT 315802 ||||||||| | ||| ||| ||||||| |||| || ||| ||||| ||| | | Sbjct 189672 AAGAACGATCAAGTGAGGTCGTTGCCA-CGAGCAAGCTGCGAGAACGACCTTGACACGCT 189614 Query 315803 GCCCACCAGACAGTCCACGGATGCGAGAATG 315833 | ||||||||||| ||||| |||||||| || Sbjct 189613 GGCCACCAGACAGACCACGCATGCGAGAGTG 189583 >seq382 Length=167612 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || ||||| | || || || |||||||||||||| | Sbjct 145481 ACCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 145422 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 145421 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 145362 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 145361 AATGCCCTCCTTGTCT 145346 >seq244 Length=165466 Score = 89.7 bits (98), Expect = 1e-12 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213 ||| || | ||| |||| || | || | | ||| |||||||| | | ||| || | Sbjct 56259 GTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTG 56200 Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273 || ||| || ||||||||||||| |||||| | || || || || || || || Sbjct 56199 CCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCC 56140 Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333 || ||| | || | || || || || | || | || ||| | | || ||||| | Sbjct 56139 GACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCAATCCCTTTGAC 56080 Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393 ||||||||| ||| || || ||| || || ||||||||||| |||||||| | || Sbjct 56079 TTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAC 56020 Query 230394 TATCAAAGGCCCGGTGT 230410 || || | | ||||||| Sbjct 56019 TACCAGAAGGCCGGTGT 56003 >seq176 Length=447728 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || | ||||||||| ||||| || || || ||||||||||| | | Sbjct 44170 CCACCGCGAACGCGAAGTACGAGATGAGCGGTACTCTCCGCCTGGATGTTGTATTTGGAT 44111 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || ||||| | ||||| | |||||| || || | || Sbjct 44110 AGAGTGCGTCCTTCCTCGAGCTGCTTCCCACCGAAGATGAGACGTTGCTGATCGGCGGGT 44051 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC- 283051 || |||||| | || |||||||||| | | | ||||| ||| | || | || || Sbjct 44050 ATGCCCTCCATATCCTGGATCTTTGACATCATATTCTCGATCGTGCCGGAGGACTCCACG 43991 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||| || || |||||||| || || Sbjct 43990 TTCAAG-GTTATCGTCTTGCCTGT 43968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733500177950