Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq9 188 1e-42
seq151 111 3e-19
seq382 105 1e-17
seq244 89.7 1e-12
seq176 86.0 1e-11
>seq9
Length=355999
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||| || || |||| || | || ||| || |||||||||||||| |
Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||||||||| || || || || || || || | ||| ||||||||| ||
Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| ||||||||||| | ||| ||| | ||||| ||||| |||| || ||
Sbjct 44840 ATACCCTCCTTATCTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAACC 44899
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 44900 TCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || || ||||||||||||||||| |
Sbjct 44947 ACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGA 45006
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || ||||||||||||||||| || || || |||
Sbjct 45007 CAGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGG 45066
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||| ||||| || ||||||| ||||||| | ||||| || ||||| | |||||
Sbjct 45067 GATACCCTCTTTGTCCTGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCGAC 45126
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| |||||||| ||||| || || | ||||| ||||| || |||||
Sbjct 45127 CTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 159 bits (176), Expect = 7e-34
Identities = 161/207 (78%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
|||||| || || || || || ||||| | ||| ||| || |||||||||||||| |
Sbjct 45175 ACCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 45234
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| |||||||||||||| ||||| || || || |||||||| || |||||||| |
Sbjct 45235 CAAG-GTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAG 45293
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| ||||||||||| || || |||| || || | ||||| || || || | |||||
Sbjct 45294 GAATGCCCTCCTTGTCCTGAATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGA 45353
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
||||||| ||||| ||||| || ||||
Sbjct 45354 CTTCGAGGGTGATGGTCTTGCCGGTCA 45380
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||||| ||| ||| || |||||||||||||| |
Sbjct 45458 ACCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 45517
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || || || || || || || || |||||||| || |||||||| ||
Sbjct 45518 CAGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGG 45577
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| ||||| || | ||||| | ||||| ||||| || | |||||
Sbjct 45578 AATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCGATGGTGTCGGAGGACTCGAC 45637
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||| | ||||| ||||| |||||
Sbjct 45638 TTCCAAGGTGATGGTCTTTCCCGT 45661
>seq151
Length=370960
Score = 111 bits (122), Expect = 3e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| |||||||| ||||| |||| || | || || ||||||||||||||||| |
Sbjct 220872 ACCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 220931
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||| ||||||| || ||||| || ||
Sbjct 220932 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGG 220991
Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015
||| ||||||||||||||||||||
Sbjct 220992 AATGCCCTCCTTGTCTTGGATCTT 221015
Score = 89.7 bits (98), Expect = 1e-12
Identities = 112/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Minus
Query 315684 CTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATC 315743
||| || |||| | || ||||||||| || ||||| | ||||||| ||||| ||
Sbjct 189732 CTTCAGAGCCTTGGACAAAGCACCGAGAGAGTCACGGTCGAGGTAGTTGGTTGGCTCGTC 189673
Query 315744 AAGAACGATGACGTGGGGTTGTTGCCATAGAGC-GGCGCCGATAACGAGCTTTAGTTTTT 315802
||||||||| | ||| ||| ||||||| |||| || ||| ||||| ||| | |
Sbjct 189672 AAGAACGATCAAGTGAGGTCGTTGCCA-CGAGCAAGCTGCGAGAACGACCTTGACACGCT 189614
Query 315803 GCCCACCAGACAGTCCACGGATGCGAGAATG 315833
| ||||||||||| ||||| |||||||| ||
Sbjct 189613 GGCCACCAGACAGACCACGCATGCGAGAGTG 189583
>seq382
Length=167612
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || ||||| | || || || |||||||||||||| |
Sbjct 145481 ACCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 145422
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || |||||||| | ||| || ||||| ||
Sbjct 145421 GAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 145362
Query 282992 AATACCCTCCTTGTCT 283007
||| ||||||||||||
Sbjct 145361 AATGCCCTCCTTGTCT 145346
>seq244
Length=165466
Score = 89.7 bits (98), Expect = 1e-12
Identities = 174/257 (68%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213
||| || | ||| |||| || | || | | ||| |||||||| | | ||| || |
Sbjct 56259 GTGCAAGACATCATCACTGAGGCCGTCACCATTGAGCAGGAGTTCTTGTCCGAGTCTTTG 56200
Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273
|| ||| || ||||||||||||| |||||| | || || || || || || ||
Sbjct 56199 CCATGCGCACTGCTCGGCATGAATGCCACCCTCATGTGCCAGTACATTGAGTTTGTTGCC 56140
Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333
|| ||| | || | || || || || | || | || ||| | | || ||||| |
Sbjct 56139 GACCGTCTGCTCTTAGCCCTCGGCAACAACAAGTTCTACAACGCTACCAATCCCTTTGAC 56080
Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393
||||||||| ||| || || ||| || || ||||||||||| |||||||| | ||
Sbjct 56079 TTTATGGAGAACATCTCCCTGGCGGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAC 56020
Query 230394 TATCAAAGGCCCGGTGT 230410
|| || | | |||||||
Sbjct 56019 TACCAGAAGGCCGGTGT 56003
>seq176
Length=447728
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || | ||||||||| ||||| || || || ||||||||||| | |
Sbjct 44170 CCACCGCGAACGCGAAGTACGAGATGAGCGGTACTCTCCGCCTGGATGTTGTATTTGGAT 44111
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||| || ||||| || || ||||| | ||||| | |||||| || || | ||
Sbjct 44110 AGAGTGCGTCCTTCCTCGAGCTGCTTCCCACCGAAGATGAGACGTTGCTGATCGGCGGGT 44051
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC- 283051
|| |||||| | || |||||||||| | | | ||||| ||| | || | || ||
Sbjct 44050 ATGCCCTCCATATCCTGGATCTTTGACATCATATTCTCGATCGTGCCGGAGGACTCCACG 43991
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||| || || |||||||| || ||
Sbjct 43990 TTCAAG-GTTATCGTCTTGCCTGT 43968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046733500177950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |