Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-26 >seq9 Length=355999 Score = 134 bits (148), Expect = 1e-26 Identities = 173/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||| || || |||||||||||||||||| || Sbjct 44944 CATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTC 45003 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || || |||||||| |||||||||||||||||||||||||| Sbjct 45004 TGACAGAGTT--CGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCC 45061 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGA 44283 | || | ||| || || ||| ||||| || || | ||| | ||||| || | || Sbjct 45062 GGCGGGATACCCTCTTTGTCCTGAATCTT-TGATTTTACGTTGTCGATGGTATCCGATGA 45120 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 45121 CTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 Score = 98.7 bits (108), Expect = 7e-16 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||||| ||||||||||| |||| || ||| |||| || Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || |||||||| ||||| || |||| || | || ||||| ||| Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||| || ||| | |||||||||| ||| || || |||| || || |||| Sbjct 45597 ATTTTGGACTTTACATTGT--CGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCT 45654 Query 44307 TTCCCGT 44313 ||||||| Sbjct 45655 TTCCCGT 45661 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||| |||||| || ||||| ||||||||||| |||| Sbjct 44719 TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 44778 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 ||| || | || || |||||||| || || || || | |||||| || || | || Sbjct 44779 GAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGG 44838 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| || |||||| | || | ||| | |||||||| | || || | Sbjct 44839 GATACCCTCCTTATCTTGGATCTTC-GATTTGACGTTGTCGATGGTGTCTGAAGACTCAA 44897 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| || || || ||||| ||||| || ||||| Sbjct 44898 CCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 86.0 bits (94), Expect = 5e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || ||||| ||| ||||| ||||||||||| |||| | || | ||| | || || Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGGCCATCCTC 45252 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||||| || || |||||||| ||||| || |||| ||| | || ||||| ||| Sbjct 45253 CAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 45312 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | ||||| || | |||||| || || | || || ||||| Sbjct 45313 AATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTT 45372 Query 44308 TCCCGT 44313 || || Sbjct 45373 GCCGGT 45378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988535362225