Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq9 134 1e-26
>seq9
Length=355999
Score = 134 bits (148), Expect = 1e-26
Identities = 173/234 (74%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| ||| || || |||||||||||||||||| ||
Sbjct 44944 CATACCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTC 45003
Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
| ||||| || | || || |||||||| ||||||||||||||||||||||||||
Sbjct 45004 TGACAGAGTT--CGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCC 45061
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGA 44283
| || | ||| || || ||| ||||| || || | ||| | ||||| || | ||
Sbjct 45062 GGCGGGATACCCTCTTTGTCCTGAATCTT-TGATTTTACGTTGTCGATGGTATCCGATGA 45120
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| | || || ||||| || ||||| ||||| ||||||||||||||
Sbjct 45121 CTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
Score = 98.7 bits (108), Expect = 7e-16
Identities = 135/187 (72%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| ||||| ||||||||||| |||| || ||| |||| ||
Sbjct 45477 ACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCG 45536
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || |||||||| ||||| || |||| || | || ||||| |||
Sbjct 45537 AGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 45596
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| || ||| || ||| | |||||||||| ||| || || |||| || || ||||
Sbjct 45597 ATTTTGGACTTTACATTGT--CGATGGTGTCGGAGGACTCGACTTCCAAGGTGATGGTCT 45654
Query 44307 TTCCCGT 44313
|||||||
Sbjct 45655 TTCCCGT 45661
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || | ||| | | ||||| |||||| || ||||| ||||||||||| ||||
Sbjct 44719 TCCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGA 44778
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
||| || | || || |||||||| || || || || | |||||| || || | ||
Sbjct 44779 GAGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGG 44838
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCA 44288
| ||| ||||| || |||||| | || | ||| | |||||||| | || || |
Sbjct 44839 GATACCCTCCTTATCTTGGATCTTC-GATTTGACGTTGTCGATGGTGTCTGAAGACTCAA 44897
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || || ||||| || || || ||||| ||||| || |||||
Sbjct 44898 CCTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 86.0 bits (94), Expect = 5e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| || ||||| ||| ||||| ||||||||||| |||| | || | ||| | || ||
Sbjct 45194 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGGCCATCCTC 45252
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||| ||||| || || |||||||| ||||| || |||| ||| | || ||||| |||
Sbjct 45253 CAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTG 45312
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|| || ||||| | | ||||| || | |||||| || || | || || |||||
Sbjct 45313 AATTTTTGACTTCACATTGTCGATGGTATCAGAGGATTCGACTTCGAGGGTGATGGTCTT 45372
Query 44308 TCCCGT 44313
|| ||
Sbjct 45373 GCCGGT 45378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359988535362225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |