Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq151 134 1e-26
seq9 134 1e-26
seq382 111 1e-19
>seq151
Length=370960
Score = 134 bits (148), Expect = 1e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | |||| || || || |||||| || ||||| |||||||||
Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| |||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||||||
Sbjct 220993 ATGCCCTCCTTGTC 221006
>seq9
Length=355999
Score = 134 bits (148), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| |||||||| ||||| ||||||||
Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| |||||||||||||| ||||| |||| |||||||||||| | ||||
Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| |||||| ||| || | || | |||||| ||||| |
Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCG--ATGGTGTCGGAGGACTCGA 45636
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
| |||| || || || || |||||
Sbjct 45637 CTTCCAAGGTGATGGTCTTTCCCGT 45661
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | ||||| || || || |||||||| ||||| |||||||||
Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || |||||||| || ||||| || || ||||||||||| | ||
Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | || | || | || ||| | | | ||||| ||||| ||
Sbjct 44840 ATACCCTCCTTAT-CTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAAC 44898
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||||||||||||
Sbjct 44899 CTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946
Score = 114 bits (126), Expect = 1e-20
Identities = 118/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || ||||| || ||| |||||||| ||||| ||||||||
Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || || ||||| || ||||| |||| ||||||||||| | |||
Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786
| || |||||||||| ||| |||||| |||||
Sbjct 45296 ATGCCCTCCTTGTCC-TGAATTTTTGACTTCA 45326
Score = 105 bits (116), Expect = 6e-18
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||||| || |||||| || ||||| ||||| ||
Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| || || | || ||||||||||| ||||| || |||| ||||| || ||| |||||
Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067
Query 41755 A-ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812
| || |||| |||||| ||| | |||| || ||| | | | || || |||||
Sbjct 45068 ATACCCTCT--TTGTCC-TGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCG 45124
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || || || || || ||||| ||||| || |||||
Sbjct 45125 ACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174
>seq382
Length=167612
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||| ||||| || || ||||||||| ||||| |||||||||
Sbjct 145480 CCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 145421
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| || || || || || ||||| ||||| | ||||
Sbjct 145420 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGA 145361
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||||||
Sbjct 145360 ATGCCCTCCTTGTC 145347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301544010000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |