Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq151 134 1e-26 seq9 134 1e-26 seq382 111 1e-19 >seq151 Length=370960 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || || |||||| || ||||| ||||||||| Sbjct 220873 CCGCCACGCAGACGAAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 220932 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| |||||||||||||| |||| |||| Sbjct 220933 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 220992 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 220993 ATGCCCTCCTTGTC 221006 >seq9 Length=355999 Score = 134 bits (148), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| |||||||| ||||| |||||||| Sbjct 45459 CCACCACGAAGGCGGAGGACGAGATGTAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45518 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| ||||| |||| |||||||||||| | |||| Sbjct 45519 AGGGTGCGACCGTCTTCGAGCTGCTTGCCTGCGAAGATCAAGCGCTGTTGGTCTGGGGGA 45578 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| |||||| ||| || | || | |||||| ||||| | Sbjct 45579 ATGCCCTCCTTGTCCTGGATTTTGGACTTTACATTGTCG--ATGGTGTCGGAGGACTCGA 45636 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 | |||| || || || || ||||| Sbjct 45637 CTTCCAAGGTGATGGTCTTTCCCGT 45661 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || || |||||||| ||||| ||||||||| Sbjct 44720 CCGCCACGCAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 44779 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| || || ||||||||||| | || Sbjct 44780 AGCGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGGTCAGGTGGG 44839 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| | | || | || | || ||| | | | ||||| ||||| || Sbjct 44840 ATACCCTCCTTAT-CTTGGATCTTCGATTTGACGTTGTCGATGGTGTCTGAAGACTCAAC 44898 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 44899 CTCGAGAGTGATTGTCTTGCCAGTCAGAGTCTTAACGAAAATCTGCAT 44946 Score = 114 bits (126), Expect = 1e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || ||| |||||||| ||||| |||||||| Sbjct 45176 CCACCGCGAAGACGGAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 45235 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || || ||||| || ||||| |||| ||||||||||| | ||| Sbjct 45236 AAGGTGCGGCCATCCTCCAGTTGCTTACCAGCGAAGATCAATCGCTGTTGGTCTGGAGGA 45295 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | || |||||||||| ||| |||||| ||||| Sbjct 45296 ATGCCCTCCTTGTCC-TGAATTTTTGACTTCA 45326 Score = 105 bits (116), Expect = 6e-18 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || |||||| || ||||| ||||| || Sbjct 44948 CCACCACGGAGACGCAGCACCAAGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCTGAC 45007 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || || | || ||||||||||| ||||| || |||| ||||| || ||| ||||| Sbjct 45008 AGAGTTCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGATCCGGCGGG 45067 Query 41755 A-ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | || |||| |||||| ||| | |||| || ||| | | | || || ||||| Sbjct 45068 ATACCCTCT--TTGTCC-TGAATCTTTGATTTTACGTTGTCGATGGTATCCGATGACTCG 45124 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| ||||| || ||||| Sbjct 45125 ACCTCAAGAGTGATGGTCTTGCCAGTGAGTGTCTTGACGAAGATTTGCAT 45174 >seq382 Length=167612 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| || || ||||||||| ||||| ||||||||| Sbjct 145480 CCACCACGCAGGCGGAGCACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 145421 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || || || || || ||||| ||||| | |||| Sbjct 145420 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGA 145361 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 145360 ATGCCCTCCTTGTC 145347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301544010000