Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 9e-23
seq2 120 3e-22
seq6 107 2e-18
>seq9
Length=1275601
Score = 122 bits (134), Expect = 9e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 1014903 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCAGC 1014962
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | ||| || || | ||||| ||||||||||| | |||||
Sbjct 1014963 GATACCATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 1015022
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| || |||||||| || || | ||||||||| ||||||||||
Sbjct 1015023 CAACGCTTGATTTTCGCTGGTAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 1015082
Query 40870 ATCCAGAAGGAG 40881
||||||||||||
Sbjct 1015083 ATCCAGAAGGAG 1015094
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||||||||| | || || ||||| ||||| | || || || | |
Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| |||| ||| |||| || ||||| || ||||| | |||||
Sbjct 1015478 GATACGATCGACAACG-TCAAAACAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCA 1015536
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| ||| || ||||| || || |||| ||||| || || |||||
Sbjct 1015537 GCAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAA 1015596
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||| || ||| | || || || || || ||||| ||| | || ||
Sbjct 1015597 CATCCAAAAAGAGTCTACCCTCCACCTTGTTTTGCGGTTGCGCGGTGG 1015644
Score = 102 bits (112), Expect = 8e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|||||||| ||||||||| | |||||||||||| | |||| ||| || ||||| || ||
Sbjct 1015283 GACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGATCTTCGCTGGTAAACAACTCGAG 1015342
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | ||||||||| || |||||||| ||||||||| |||| || || || ||
Sbjct 1015343 GATGGTCGCACCCTCTCGGATTACAACATTCAGAAGGAGTCCACTCTCCACCTTGT 1015398
>seq2
Length=1931404
Score = 120 bits (132), Expect = 3e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|||| ||| ||||| |||||||||||| | |||||||| || || || | ||| |||||
Sbjct 802092 AAAACCTCTAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAA 802151
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||| || | ||||||||| ||||||||||||||||||||| |||| || ||
Sbjct 802152 ACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCA 802211
Query 40893 TCTAGT 40898
|| ||
Sbjct 802212 CCTTGT 802217
>seq6
Length=1499889
Score = 107 bits (118), Expect = 2e-18
Identities = 195/285 (68%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| || || || |||||||| | |||||| | ||| ||
Sbjct 78782 ATCTGGCAAATGTACAAGAAGGCTGAAGCATCTTTCTGGACTGCTGAGGAGATCGACTTG 78723
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| || ||||||| | | | || || ||||||| | || ||
Sbjct 78722 TCCAAAGATCTTCACGACTGGAACAACAAACTCAATGATGACGAGCGATACTTTGTCTCT 78663
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
| |||||||| || |||||||| ||||| || ||||||||||| || || |||||
Sbjct 78662 CGTGTGCTGGCATTCTTCGCCGCTTCTGACGGAATTGTCAACGAGAACCTTGTGGAGCGC 78603
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | | ||||| || || ||||| || ||||||||| |||
Sbjct 78602 TTCAGTGGTGAAGTCCAAATCCCAGAGGCCCGTTGTTTCTATGGATTTCAGATCATGATG 78543
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|| ||| | || || |||| || || || || ||||| |||
Sbjct 78542 GAAAACATCCATTCAGAAACATACTCCCTTCTGATTGACACATAC 78498
Score = 102 bits (112), Expect = 8e-17
Identities = 251/378 (66%), Gaps = 2/378 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||| ||||| ||||| | || |||||| | || || || | || | |||| |
Sbjct 78379 AGAAAGCCGACTGGGCTATTCGATGGATCCAGGATAGTGAATCCACATTTGCACAGCGTC 78320
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| | || ||||| || || ||||| ||||||| || ||| || | || || |
Sbjct 78319 TTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTTGCTTCTATTTTCT 78260
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|| | ||||| || || |||||||| ||||| |||||| ||||||||| ||||| | |
Sbjct 78259 GGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCCAACGAGCTGATCTCTCGTG 78200
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| || |||||||| || | || ||| || | || || || |
Sbjct 78199 ACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACCTCCGCCACCGTCCCA 78140
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | || | ||| ||| || || || | |||||||| ||| | |
Sbjct 78139 GCCCAGAAGCTGTTGCAGCAATCATCATTGAAGCCGTGGAAATCGAGCAAGAATTCTTAA 78080
Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340
| || || || || |||| ||| || || | || | | | ||||| |||||||||
Sbjct 78079 CGGATGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCCAAGTTGATGTGCCAATACATC 78021
Query 117341 GAGTTCGTCGCCGACAGG 117358
|||||||| |||||| ||
Sbjct 78020 GAGTTCGTAGCCGACCGG 78003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218948830640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |