Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq2 120 3e-22 seq6 107 2e-18 >seq9 Length=1275601 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 1014903 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCAGC 1014962 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||||||||| | ||||| Sbjct 1014963 GATACCATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 1015022 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| || |||||||| || || | ||||||||| |||||||||| Sbjct 1015023 CAACGCTTGATTTTCGCTGGTAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 1015082 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 1015083 ATCCAGAAGGAG 1015094 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || || ||||| ||||| | || || || | | Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| |||| ||| |||| || ||||| || ||||| | ||||| Sbjct 1015478 GATACGATCGACAACG-TCAAAACAAAGATTCAAGATAAAGAAGGTATCCCACCAGACCA 1015536 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || ||||| || || |||| ||||| || || ||||| Sbjct 1015537 GCAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAA 1015596 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || ||| | || || || || || ||||| ||| | || || Sbjct 1015597 CATCCAAAAAGAGTCTACCCTCCACCTTGTTTTGCGGTTGCGCGGTGG 1015644 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||| ||||||||| | |||||||||||| | |||| ||| || ||||| || || Sbjct 1015283 GACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGATCTTCGCTGGTAAACAACTCGAG 1015342 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | ||||||||| || |||||||| ||||||||| |||| || || || || Sbjct 1015343 GATGGTCGCACCCTCTCGGATTACAACATTCAGAAGGAGTCCACTCTCCACCTTGT 1015398 >seq2 Length=1931404 Score = 120 bits (132), Expect = 3e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 |||| ||| ||||| |||||||||||| | |||||||| || || || | ||| ||||| Sbjct 802092 AAAACCTCTAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAA 802151 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || | ||||||||| ||||||||||||||||||||| |||| || || Sbjct 802152 ACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTTCA 802211 Query 40893 TCTAGT 40898 || || Sbjct 802212 CCTTGT 802217 >seq6 Length=1499889 Score = 107 bits (118), Expect = 2e-18 Identities = 195/285 (68%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| || || || |||||||| | |||||| | ||| || Sbjct 78782 ATCTGGCAAATGTACAAGAAGGCTGAAGCATCTTTCTGGACTGCTGAGGAGATCGACTTG 78723 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || ||||||| | | | || || ||||||| | || || Sbjct 78722 TCCAAAGATCTTCACGACTGGAACAACAAACTCAATGATGACGAGCGATACTTTGTCTCT 78663 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 | |||||||| || |||||||| ||||| || ||||||||||| || || ||||| Sbjct 78662 CGTGTGCTGGCATTCTTCGCCGCTTCTGACGGAATTGTCAACGAGAACCTTGTGGAGCGC 78603 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | | ||||| || || ||||| || ||||||||| ||| Sbjct 78602 TTCAGTGGTGAAGTCCAAATCCCAGAGGCCCGTTGTTTCTATGGATTTCAGATCATGATG 78543 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 || ||| | || || |||| || || || || ||||| ||| Sbjct 78542 GAAAACATCCATTCAGAAACATACTCCCTTCTGATTGACACATAC 78498 Score = 102 bits (112), Expect = 8e-17 Identities = 251/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||| ||||| ||||| | || |||||| | || || || | || | |||| | Sbjct 78379 AGAAAGCCGACTGGGCTATTCGATGGATCCAGGATAGTGAATCCACATTTGCACAGCGTC 78320 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | | || ||||| || || ||||| ||||||| || ||| || | || || | Sbjct 78319 TTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTTGCTTCTATTTTCT 78260 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | ||||| || || |||||||| ||||| |||||| ||||||||| ||||| | | Sbjct 78259 GGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCCAACGAGCTGATCTCTCGTG 78200 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || |||||||| || | || ||| || | || || || | Sbjct 78199 ACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTCACCTCCGCCACCGTCCCA 78140 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || | ||| ||| || || || | |||||||| ||| | | Sbjct 78139 GCCCAGAAGCTGTTGCAGCAATCATCATTGAAGCCGTGGAAATCGAGCAAGAATTCTTAA 78080 Query 117282 CCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || || || |||| ||| || || | || | | | ||||| ||||||||| Sbjct 78079 CGGATGCTCTTCCATGTGC-TCTCCTTGGCATGAACTCCAAGTTGATGTGCCAATACATC 78021 Query 117341 GAGTTCGTCGCCGACAGG 117358 |||||||| |||||| || Sbjct 78020 GAGTTCGTAGCCGACCGG 78003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218948830640