Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 161 9e-35 seq6 105 6e-18 seq9 84.2 2e-11 >seq7 Length=1353353 Score = 161 bits (178), Expect = 9e-35 Identities = 423/642 (66%), Gaps = 4/642 (1%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| ||| |||| || | || || |||| || ||| ||| || || ||||| Sbjct 416128 TTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGGGCGAGGAAAAGATCTCGGGCT 416069 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCCAAAAAGTCCAACACGTCCGCAT 23456 | ||| || ||||| || || | |||| | | |||||||| || || ||||| | | Sbjct 416068 CTCACTTCTTCTTTACCA-TGAT-TTTTACGGAGGTCCAAAAACTCAAATACGTCAGAGT 416011 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| || || || |||| ||||| || || || | ||||||||||||||||| || | Sbjct 416010 GCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCGCCCTGATCCACAT 415951 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | | ||| || ||||| | || | ||||| || | || || || || | ||| | Sbjct 415950 ATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTAGAGGAGCCATTTG 415891 Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636 || || | || || |||| || | |||||||| || || || || || Sbjct 415890 TTCCTGCAATGTAGGAGCCAGTTGCACGGATTCGGTGAACGTTGAGTCCAATACCCCCAG 415831 Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | | || || |||| || ||| ||||| || || ||||| ||||| || || |||| Sbjct 415830 CAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCCCTCAATACTATCCT 415771 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | || | | | | ||| || |||| ||| || | || || || | || ||| | Sbjct 415770 CCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGTTCCCGCATTGAAAA 415711 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 |||| || ||||| ||||| || | ||||| || | ||| || || || || Sbjct 415710 GTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTATGTCTCAATCGCTT 415651 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 |||||||||||| || ||||| | ||| |||||||| ||||| | || || | | Sbjct 415650 TATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATCATATGCTGCGGACGTT 415591 Query 23877 CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAAT 23936 | | |||||| ||| | | ||||| || | | || || || || ||||| | Sbjct 415590 CAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGTGTCTTGAACCCAAAGT 415531 Query 23937 AGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 | | ||||| || ||||| || | || || || || |||| Sbjct 415530 ACTGGTAGTTGAAATCACGGTCATAAACGATAGCGGAGTTCA 415489 >seq6 Length=1499889 Score = 105 bits (116), Expect = 6e-18 Identities = 307/467 (66%), Gaps = 18/467 (4%) Strand=Plus/Minus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| || || || | || || || |||||||| || || ||||| ||||| || Sbjct 78337 CCACATTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTT 78278 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||||| | || || ||| | ||||| || || || ||||| ||||| || || || Sbjct 78277 CTTTTGCTTCTATTTTCTGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCCA 78218 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| |||| || || ||||||||||| || ||||| ||||| ||||| | | ||||| Sbjct 78217 ACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTC 78158 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCGAGGCGGTCGC 58195 || | | | || | | || || | ||| | || |||| || || || | Sbjct 78157 ACCTCCGCCACCGTCCCAGCCCAGA-AGC-TGTTGCAGCAATCATCATTGAAGCCGTGGA 78100 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 ||||| | || || | || || || || || || | || || |||||| | Sbjct 78099 AATCGAGCAAGAATTCTTAACGGATGCTCTTCCATGTGCTCTCCTTGGCATGAACTCCAA 78040 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG---ACTT-TTGCTCGAACTGATTG 58311 ||||||| | ||||| ||||| || |||||| | |||| | |||| ||| Sbjct 78039 GTTGATGTGCCAATACATCGAGTTCGTAGCCGACCGGTTACTTGTAGCTC-------TTG 77987 Query 58312 G---AGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368 | || ||||| ||| | | || || || || || ||| || |||||||| | Sbjct 77986 GCAACAAGAAACATTATAACTCCACGAACCCATTCGACTTCATGGATAACATCTCGCTTG 77927 Query 58369 AGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 |||||||| |||||||| || || ||| |||| || |||||| Sbjct 77926 CCGGCAAGACCAACTTTTTTGAGAAGCGTGTTGGCGATTACCAAAAA 77880 >seq9 Length=1275601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || | || || ||||| ||||| | || ||||| | || Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| ||||| || || || || ||||| | || || ||||| Sbjct 1015478 GATACGATCGACAACGTCAAAACAAAG-ATTCAAGATAAAGAAGGTATCCCACCAGACCA 1015536 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || ||||| ||||| || ||||| | || ||| || || ||||| || Sbjct 1015537 GCAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAA 1015596 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| |||||||| || || || || || || Sbjct 1015597 CATCCAAAAAGAGTCTACCCTCCACCTTGT 1015626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766182688880