Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq7 161 9e-35
seq6 105 6e-18
seq9 84.2 2e-11
>seq7
Length=1353353
Score = 161 bits (178), Expect = 9e-35
Identities = 423/642 (66%), Gaps = 4/642 (1%)
Strand=Plus/Minus
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|| ||||| ||| |||| || | || || |||| || ||| ||| || || |||||
Sbjct 416128 TTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGGGCGAGGAAAAGATCTCGGGCT 416069
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCCAAAAAGTCCAACACGTCCGCAT 23456
| ||| || ||||| || || | |||| | | |||||||| || || ||||| | |
Sbjct 416068 CTCACTTCTTCTTTACCA-TGAT-TTTTACGGAGGTCCAAAAACTCAAATACGTCAGAGT 416011
Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516
|||| || || || |||| ||||| || || || | ||||||||||||||||| || |
Sbjct 416010 GCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCGCCCTGATCCACAT 415951
Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576
| | ||| || ||||| | || | ||||| || | || || || || | ||| |
Sbjct 415950 ATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTAGAGGAGCCATTTG 415891
Query 23577 CGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGC 23636
|| || | || || |||| || | |||||||| || || || || ||
Sbjct 415890 TTCCTGCAATGTAGGAGCCAGTTGCACGGATTCGGTGAACGTTGAGTCCAATACCCCCAG 415831
Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696
| | || || |||| || ||| ||||| || || ||||| ||||| || || ||||
Sbjct 415830 CAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCCCTCAATACTATCCT 415771
Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756
| || | | | | ||| || |||| ||| || | || || || | || ||| |
Sbjct 415770 CCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGTTCCCGCATTGAAAA 415711
Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816
|||| || ||||| ||||| || | ||||| || | ||| || || || ||
Sbjct 415710 GTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTATGTCTCAATCGCTT 415651
Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876
|||||||||||| || ||||| | ||| |||||||| ||||| | || || | |
Sbjct 415650 TATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATCATATGCTGCGGACGTT 415591
Query 23877 CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAAT 23936
| | |||||| ||| | | ||||| || | | || || || || ||||| |
Sbjct 415590 CAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGTGTCTTGAACCCAAAGT 415531
Query 23937 AGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978
| | ||||| || ||||| || | || || || || ||||
Sbjct 415530 ACTGGTAGTTGAAATCACGGTCATAAACGATAGCGGAGTTCA 415489
>seq6
Length=1499889
Score = 105 bits (116), Expect = 6e-18
Identities = 307/467 (66%), Gaps = 18/467 (4%)
Strand=Plus/Minus
Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017
|||| || || || | || || || |||||||| || || ||||| ||||| ||
Sbjct 78337 CCACATTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTT 78278
Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077
||||| | || || ||| | ||||| || || || ||||| ||||| || || ||
Sbjct 78277 CTTTTGCTTCTATTTTCTGGTTAAAGAAGCGTGGTCTCATGCCTGGCCTTACTTTCTCCA 78218
Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137
||||| |||| || || ||||||||||| || ||||| ||||| ||||| | | |||||
Sbjct 78217 ACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTTCTCTC 78158
Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTG--GACATTATCACCGAGGCGGTCGC 58195
|| | | | || | | || || | ||| | || |||| || || || |
Sbjct 78157 ACCTCCGCCACCGTCCCAGCCCAGA-AGC-TGTTGCAGCAATCATCATTGAAGCCGTGGA 78100
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255
||||| | || || | || || || || || || | || || |||||| |
Sbjct 78099 AATCGAGCAAGAATTCTTAACGGATGCTCTTCCATGTGCTCTCCTTGGCATGAACTCCAA 78040
Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAG---ACTT-TTGCTCGAACTGATTG 58311
||||||| | ||||| ||||| || |||||| | |||| | |||| |||
Sbjct 78039 GTTGATGTGCCAATACATCGAGTTCGTAGCCGACCGGTTACTTGTAGCTC-------TTG 77987
Query 58312 G---AGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCG 58368
| || ||||| ||| | | || || || || || ||| || |||||||| |
Sbjct 77986 GCAACAAGAAACATTATAACTCCACGAACCCATTCGACTTCATGGATAACATCTCGCTTG 77927
Query 58369 AGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415
|||||||| |||||||| || || ||| |||| || ||||||
Sbjct 77926 CCGGCAAGACCAACTTTTTTGAGAAGCGTGTTGGCGATTACCAAAAA 77880
>seq9
Length=1275601
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||||||||| || | || || ||||| ||||| | || ||||| | ||
Sbjct 1015418 ATGCAAATTTTCGTAAAAACCTTAACCGGAAAAACAATCACATTAGAAGTTGAGTCTTCT 1015477
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| |||| ||||| || || || || ||||| | || || |||||
Sbjct 1015478 GATACGATCGACAACGTCAAAACAAAG-ATTCAAGATAAAGAAGGTATCCCACCAGACCA 1015536
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| || ||||| ||||| || ||||| | || ||| || || ||||| ||
Sbjct 1015537 GCAACGCCTAATCTTCGCCGGTAAACAACTCGAGGACGGCCGCACACTGTCTGATTACAA 1015596
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||| |||||||| || || || || || ||
Sbjct 1015597 CATCCAAAAAGAGTCTACCCTCCACCTTGT 1015626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766182688880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |