Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 212 8e-50 seq6 89.7 7e-13 >seq7 Length=1353353 Score = 212 bits (234), Expect = 8e-50 Identities = 590/899 (66%), Gaps = 12/899 (1%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||| |||||||| | |||| | | | ||||| || | ||||| | | | | Sbjct 416200 TCGAATTCGTCTCCGTAGACATCGGCGAGTCCAGATGCCTCGTTTGGACAGAATAGTGTC 416141 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || || | | || || |||||||| || | || ||| |||| || || | || Sbjct 416140 CAATCGCCATTCTTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGGGCGAGGAAA 416081 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 66158 | ||||| || ||| ||| || || || || |||||| || || | ||| | Sbjct 416080 AGATCTCGGGCTCTCACTTCTTCTTTACC---ATGATTTTTACGGAGGTCCAAAAACTCA 416024 Query 66159 ATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 66218 | | ||| | ||||| ||||| | || || || | | | ||||| ||||| || || Sbjct 416023 AATACGTCAGAGTGCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCG 415964 Query 66219 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 66278 |||||||| | ||||| || || || ||| | || | | ||| ||||| || ||||| Sbjct 415963 CCCTGATCCACATATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTA 415904 Query 66279 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AG 66337 || | ||||| || || | || ||| ||| ||||||| || | | | | | || Sbjct 415903 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTTGCACGGAT-TCGGTGAACGTTGAG 415845 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 || || ||||| || | || || || | || ||| || | ||||||||||| || Sbjct 415844 TCCAATACCCCCAGCAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCC 415785 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||| |||||||| ||| |||| | || || || ||| || ||| || | || || Sbjct 415784 CTCAATACTATCCTCCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGT 415725 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||||||||| || | || ||||||||||| ||||| |||||| || | || | ||| Sbjct 415724 TCCCGCATTGAAAAGTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTA 415665 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 |||||||| ||| || || ||| |||||||| || || || || ||||| | ||| Sbjct 415664 TGTCTCAATCGCTTTATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATCAT 415605 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 ||||| || | |||| | | ||| ||| ||| | | | || || | |||| || Sbjct 415604 ATGCTGCGGACGTTCAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGTGT 415545 Query 66638 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 || || ||||| || | ||| ||||| || || || |||| ||| | ||||| || Sbjct 415544 CTTGAACCCAAAGTACTGGTAGTTGAAA--TCACGGTCATAAACGATAGCGGAGTTCAGC 415487 Query 66696 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTC 66755 | || | ||| | || | ||| | | || || || || |||| | | Sbjct 415486 TCTTCGGCGTGTTTCATTACAATATCGTATATTTTTCTGGATATCATGGGAGCAGGGCGG 415427 Query 66756 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 66815 || || || || ||||| | | | ||| || || || |||| |||| || Sbjct 415426 TTGTTCTTTGGGTTCACATATCTATAGAGATCTTCGATAACGGACGAAAATTGTTTCTTG 415367 Query 66816 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 |||| ||||| | || || ||||| |||||||| || | ||||||||||| || || Sbjct 415366 GTTTGCTTGTGCAAGTTGGACACGGCGATTCTAGCAGCAAGGATGGCATAATCAGGGTG 415308 Score = 116 bits (128), Expect = 5e-21 Identities = 699/1113 (63%), Gaps = 23/1113 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||| || || || || | | || || ||||||||||| || ||||| | | Sbjct 417403 GTGAATTGAATTGGGGCAGAAGCAGCCATAGTCCGAAGATAGTACATGCCGGTTTTCAAA 417344 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || ||||||||| || || | |||| | || || | | Sbjct 417343 CCTAATTTCCAGCCAGCAAAATGCATGCTAGTAATTTTGCCCATTGTGGGCTCCTTAAGA 417284 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||||| |||||||||||| || || | ||||||||||| | | Sbjct 417283 TGAATATTGAGGGATTGGGATTGATCGATGAAAGCACCACGATCTGCAGCCATCTGAACA 417224 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || ||| || | ||||||||| | ||| || |||| || || || || || | Sbjct 417223 ATAGTCCGCTGAGAAATTTCCCATACAGTCTTGTAAAGGGCTTTGATGTCATCGGGGATA 417164 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | |||| ||||| || |||||||| || || || | ||| || || | ||| | Sbjct 417163 TTGGGAATATTTTGAATTGAGCCACCATCAGCGATGATGCGATTTTTCATGTTGTCAGAC 417104 Query 65136 CATAATTTTCTCTCGGTTAA----AACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 65191 || | | | ||| || | || | || || || ||||| ||||| ||||| Sbjct 417103 CAAAGT----CCAAGGTCAACAAGATCTTTCAGAAGCCATGGGTTAACAACTTGGAATTC 417048 Query 65192 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 65251 ||| | | |||| ||||| || ||||| ||| || || || | | || || Sbjct 417047 TCCTGCAAGGACTCGCCGAGAATAGATATTTGAGGTGTATGGCTCAAAGCATTCGTTGAA 416988 Query 65252 TCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 65310 || | ||||| || | | | ||||| |||||||| || || | | ||| || | | Sbjct 416987 GCCAAGGATTTG-GCTGGTACTAGCAGTGGGCATAGGGGCAACAAGAAGACTGTTGCGTA 416929 Query 65311 GACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 65370 ||||| | || |||| | || |||| |||||| |||||| || || ||| | Sbjct 416928 CACCGTGTTTTGCTATTTCTTTCTTAAGAGAAACCCAATCCCAAAGGTCAGAAGGTGTTA 416869 Query 65371 CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGT 65430 | || | ||| || | | | || ||| ||||||| |||| Sbjct 416868 CGTTCCACATATCATACTGCAAAATTCCCTGAGAAACAGGAGAACCTTCATATGTTTCGT 416809 Query 65431 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 65490 |||| ||||| ||| | ||||| || || | || | | ||||| || | Sbjct 416808 ATGGGCCTTCGGTCTTTGAAAGTTCGCAGGATGCAGTCAGGGCGGCATGGTAAATTGTCT 416749 Query 65491 CGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG- 65548 | ||||||| |||| || | ||| || ||| ||||| || || | |||| Sbjct 416748 CAAAGATCTGAATATTCAGCTGCTTAGCCTGAGAGG-AGTCAAAAGGCAAACGT-AGAGC 416691 Query 65549 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608 | || || || || | ||||||||| |||| | | || || | ||| | ||| Sbjct 416690 CAAGAAGGCATCAGCGAGTCCTTGAACCCCAAGAGCAATTGGGCGATGACGGAAGTTACT 416631 Query 65609 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 65668 || |||||| |||| || || | || |||| || || || || | ||| | || Sbjct 416630 CTTTCGAGCTTCGGGAACGGGGTAGTGGTTGTTATCAATGATCTTGTTTAAATTGCGCAC 416571 Query 65669 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCG-CTCATCTATTACAAAC 65726 | |||| | || | | || ||| ||| || | ||| | | || ||| Sbjct 416570 CACAACTTGGGTGACTGCGTGCAATTTACCAAAGTCGTACTCGCCGCGGATAGCGTCAAC 416511 Query 65727 --ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 65782 ||||| ||| |||| ||||| ||||| || ||||| || |||| | | | ||| Sbjct 416510 GTATGTTGGCAAAGCAAGTGATGCTAGATTGCACACGGCGACTTCATCGGGGGCAGTATA 416451 Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842 | || || || || || | |||| || | || ||||| | || | || || || Sbjct 416450 CTCAATAATTTCCGTACATAAATTAGAACTTCTAATAGTTCCAAGGTTCTTCTGGTTGCT 416391 Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 ||| ||||| |||||||| ||||| ||||| ||| | ||||| || | |||| ||| Sbjct 416390 CTTCCGATTACAGGCATCCTTGTAAAGCATGAAAGGATTTCCAGTCTCGGTTTGAGCTTC 416331 Query 65903 TATAATCGCTTTCCAGACGACTCGAGCCTTTAT 65935 | || || | ||||| | ||||||| || Sbjct 416330 CAAGATAGCGTACCAGAGCTTTTGAGCCTTGAT 416298 >seq6 Length=1499889 Score = 89.7 bits (98), Expect = 7e-13 Identities = 137/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 78186 GTGAAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAAGTAAGGCCAGGCATGAGACC 78245 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 |||||| || | ||| || || || ||||| || ||| ||||| || || || || || Sbjct 78246 ACGCTTCTTTAACCAGAAAATAGAAGCAAAAGAACCACTGAAGAAGATACCCTCAACAGC 78305 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTTTGAGC 36348 || || |||||||| | || | || | || |||| || || ||||| ||| Sbjct 78306 GGCGAAAGCAATAAGACGCTGTGCAAATGTGGATTCACTATCCTGGATCCATCGAATAGC 78365 Query 36349 CCAATCGGCCTTCTT 36363 ||| ||||| ||||| Sbjct 78366 CCAGTCGGCTTTCTT 78380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172479140760