Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7 221 2e-52
seq6 105 9e-18
>seq7
Length=1353353
Score = 221 bits (244), Expect = 2e-52
Identities = 592/899 (66%), Gaps = 12/899 (1%)
Strand=Plus/Minus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
||||| |||||||| | ||| | | | ||||| || || ||||| | | || |
Sbjct 416200 TCGAATTCGTCTCCGTAGACATCGGCGAGTCCAGATGCCTCGTTTGGACAGAATAGTGTC 416141
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|| || |||| | | || |||||||| || | || ||| |||| || || | ||
Sbjct 416140 CAATCGCCATTCTTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGGGCGAGGAAA 416081
Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 72120
||||||| || ||| || || || || || |||||| || || | ||| |
Sbjct 416080 AGATCTCGGGCTCTCACTTCTTCTTTACC---ATGATTTTTACGGAGGTCCAAAAACTCA 416024
Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180
| | ||||| ||||| ||||| | || || || | | | || || ||||| || ||
Sbjct 416023 AATACGTCAGAGTGCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCG 415964
Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240
|||||||| | ||||| || || || ||| | || | | ||| ||||| || |||||
Sbjct 415963 CCCTGATCCACATATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTA 415904
Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT-AG 72299
|| | ||||| || || | || ||| ||| | ||||| || | | | | | | ||
Sbjct 415903 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTTGCACGGAT-TCGGTGAACGTTGAG 415845
Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359
|| || ||||| || | || || || | || ||| || | ||||||||||| ||
Sbjct 415844 TCCAATACCCCCAGCAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCC 415785
Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419
||| |||||||| ||| |||| | || || || ||| || ||| || | || ||
Sbjct 415784 CTCAATACTATCCTCCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGT 415725
Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479
||||||||| || | || ||||||||||| ||||| |||||| |||| || | |||
Sbjct 415724 TCCCGCATTGAAAAGTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTA 415665
Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539
|||||||| ||| || || ||| ||||| || || || || || ||||| | |||
Sbjct 415664 TGTCTCAATCGCTTTATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATCAT 415605
Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599
|||||| || | |||| | | ||| || ||| | | | || || | |||| ||
Sbjct 415604 ATGCTGCGGACGTTCAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGTGT 415545
Query 72600 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657
|| || ||||| || | ||| ||||| || || || |||| ||| | || || ||
Sbjct 415544 CTTGAACCCAAAGTACTGGTAGTTGAAA--TCACGGTCATAAACGATAGCGGAGTTCAGC 415487
Query 72658 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTC 72717
| || | ||| | || ||||| | | || || || || |||| | |
Sbjct 415486 TCTTCGGCGTGTTTCATTACAATATCGTATATTTTTCTGGATATCATGGGAGCAGGGCGG 415427
Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777
|| || || || ||||| | | | ||| || || || |||| |||| ||
Sbjct 415426 TTGTTCTTTGGGTTCACATATCTATAGAGATCTTCGATAACGGACGAAAATTGTTTCTTG 415367
Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
|||| |||||| | || || ||||| ||||| || || || ||||||||||| || ||
Sbjct 415366 GTTTGCTTGTGCAAGTTGGACACGGCGATTCTAGCAGCAAGGATGGCATAATCAGGGTG 415308
Score = 113 bits (124), Expect = 6e-20
Identities = 351/537 (65%), Gaps = 15/537 (3%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || ||||| || | || || || | || || |||||||||||||| ||||| | |
Sbjct 417403 GTGAATTGAATTGGGGCAGAAGCAGCCATAGTCCGAAGATAGTACATGCCGGTTTTCAAA 417344
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | |||| || ||||||||| || || | |||| || | | || || |
Sbjct 417343 CCTAATTTCCAGCCAGCAAAATGCATGCTAGTAATTTTGCCCATTG-TGGGCTCCTTAAG 417285
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||||| | || || |||||||||||| || || | ||||||||||| | |
Sbjct 417284 ATGAATATTGAGGGATTGGGATTGATCGATGAAAGCACCACGATCTGCAGCCATCTGAAC 417225
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| ||| || | ||||||||| | ||| || |||| || || || || || |
Sbjct 417224 AATAGTCCGCTGAGAAATTTCCCATACAGTCTTGTAAAGGGCTTTGATGTCATCGGGGAT 417165
Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
|| | |||| ||||| || |||||||| || || || | |||||| || | |||
Sbjct 417164 ATTGGGAATATTTTGAATTGAGCCACCATCAGCGATGATGCGATTTTTCATGTTGTCAGA 417105
Query 71097 CCATAATTTTCTCTCGGTTAA----AACTCTAAGGAGATGAGGATTAACTACTTGAAATT 71152
||| | | | ||| || | || | || || || ||||| ||||| ||||
Sbjct 417104 CCAAAGT----CCAAGGTCAACAAGATCTTTCAGAAGCCATGGGTTAACAACTTGGAATT 417049
Query 71153 CTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTAT 71212
|||| | | |||| |||| || ||||| ||| || || || | | || ||
Sbjct 417048 CTCCTGCAAGGACTCGCCGAGAATAGATATTTGAGGTGTATGGCTCAAAGCATTCGTTGA 416989
Query 71213 TTCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAGACTATTTCTA 71271
|| | ||||| || | | | ||||| |||||||| || || | ||||| || |
Sbjct 416988 AGCCAAGGATTTG-GCTGGTACTAGCAGTGGGCATAGGGGCAACAAGAAGACTGTTGCGT 416930
Query 71272 AGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328
| ||| ||| | |||| | || ||||| |||||| |||||| || || |||
Sbjct 416929 ACACCGTGTTTTGCTATTTCTTTCTTAAGAGAAACCCAATCCCAAAGGTCAGAAGGT 416873
>seq6
Length=1499889
Score = 105 bits (116), Expect = 9e-18
Identities = 224/332 (67%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346
|| || || |||| |||||||||| | || || ||||| | ||||| || |||
Sbjct 78451 GTATCGATAGCATCAAAGAGATAGGTACGTTGCTTCGGTTCTTTGATGTATGTGTCAATC 78510
Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
| ||| || |||||||||| |||||||| || ||||||||||| ||||||||
Sbjct 78511 AGAAGGGAGTATGTTTCTGAATGGATGTTTTCCATCATGATCTGAAATCCATAGAAACAA 78570
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
| |||||| | | || ||||| || || || || | | || ||||| || |||
Sbjct 78571 CGGGCCTCTGGGATTTGGACTTCACCACTGAAGCGCTCCACAAGGTTCTCGTTGACAATT 78630
Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTG 42524
|||||| || || || || |||| ||| | | ||| ||| ||||| | ||
Sbjct 78631 CCGTCAGAAGCGGCGAAGAATGCCAGCACACGAGAGACAAAGTATCGCTCGTCATCATTG 78690
Query 42525 -TTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583
| || ||||| || | | |||||| || | || | || || | ||||| ||
Sbjct 78691 AGTTTGTTGTTCCAGTCGTGAAGATCTTTGGACAAGTCGATCTCCTCAGCAGTCCAGAAA 78750
Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGAT 42615
|||||||| ||||| || ||||| | ||||||
Sbjct 78751 GATGCTTCAGCCTTCTTGTACATTTGCCAGAT 78782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138872819640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |