Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 >seq9 Length=1275601 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || |||||||| | || | ||||| |||||||| ||||||||||| | Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||| |||||||||||||| || |||| || |||||||| || || || Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||| ||| ||| | | || | ||| || | | || ||| Sbjct 1015524 ATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAACT 1015465 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || ||||| || ||||||||||| ||||||||| Sbjct 1015464 TCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCATA 1015417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || ||| |||| || || || || ||||| || || ||||| || Sbjct 1015800 TCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGAATACCTTCCTTA 1015741 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||||| || | | || | |||||||| | ||| ||||| | || | Sbjct 1015740 TCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCAACTTCTAATGTGATG 1015681 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||||||| | |||||| || || || |||||| Sbjct 1015680 GTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCATA 1015645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014152830480