Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 >seq9 Length=1275601 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||||| || || ||||| | | || | || || | |||||| || || || Sbjct 1015609 CTCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAA 1015550 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | ||||||||||| | || | ||||||||||||| ||| ||| |||||| | Sbjct 1015549 GATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTT 1015490 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | ||||| | | ||| || || | || |||||||| |||||||| || || || Sbjct 1015489 GTCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTAC 1015430 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 1015429 GAAAATTTGCAT 1015418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| | |||||| || ||||| || || ||||||||||| || ||||| || || | Sbjct 1015872 CCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTC-TGA 1015814 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| |||| || | ||| || || ||||| || | || || ||||| | || Sbjct 1015813 AAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGG 1015754 Query 44014 TACACCTTCTTTAT-CTGAAATTTTTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCC 44071 | |||||| |||| ||||| ||||||| ||||| | ||| || || | | || Sbjct 1015753 AATACCTTCCTTATCCTGAA--TTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCA 1015696 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || ||||| | || || ||||| || ||||| Sbjct 1015695 ACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777431369772