Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq9 141 2e-28
seq5 87.8 4e-12
>seq9
Length=1275601
Score = 141 bits (156), Expect = 2e-28
Identities = 146/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|||||||| ||||| ||||| || || || | || ||||| ||||| || || |||||
Sbjct 1015836 TCTTTCTGGATATTGTAGTCTGAAAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAG 1015777
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | |||||| || || || || ||||| ||||||||||| |||| || |||||
Sbjct 1015776 ATGAGGCGCTGTTGGTCGGGTGGAATACCTTCCTTATCCTGAATTTTTGTCTTGACATTG 1015717
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || ||| || |||| ||| || ||||| || ||||||||||| |||
Sbjct 1015716 TCAATCGTGTCCGAAGATTCAACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACA 1015657
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 1015656 AAAATCTGCAT 1015646
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || || || |||||||| || || || || || || | ||| ||
Sbjct 1015402 AAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCATC 1015343
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| |||||||| ||||| || || | | || || || || || || |||||||| ||
Sbjct 1015342 CTCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGGATGCCTTCTTTGTC 1015283
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| | ||| ||||| || | |||||| || || ||||| || ||||||||
Sbjct 1015282 CTGGATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTAATAGT 1015223
Query 104527 CTTACCAGTAAGTGTTTTTACAA 104549
||| |||||||| || || ||||
Sbjct 1015222 CTTGCCAGTAAGAGTCTTGACAA 1015200
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| ||||| || || || || ||||| || || | ||||| || |||||||| ||
Sbjct 1015614 GTAGACTCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCGAGTTGTTTACCG 1015555
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || ||||| | || || || || || || ||||||||||| |||||||||| |||
Sbjct 1015554 GCGAAGATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTTGTTTTG 1015495
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||| || || || |||| ||| || || || || || | |||
Sbjct 1015494 ACGTTGTCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTTCCGGTTAAGGTT 1015435
Query 104543 TTTACAAATATCTGCAT 104559
||||| || || |||||
Sbjct 1015434 TTTACGAAAATTTGCAT 1015418
>seq5
Length=1732373
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|| || |||||||| || | ||| | ||| || || || || ||||| || |||||
Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTC 104490
| | |||||| || || || || || || || ||||||||| ||||| || ||||| ||
Sbjct 840154 AATCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATC-TTGCTCTTGACATTATC 840212
Query 104491 TACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
| |||||||| | || ||||| || || || ||||| || || || || || || ||
Sbjct 840213 AATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAA 840272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397824660612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |