Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 125 7e-24 seq6 123 2e-23 >seq9 Length=1275601 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| |||| || | || | ||| ||||| ||||| ||||||||||| | Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || || || || ||| |||||| || |||||||| || ||| Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | || |||| | || | ||||| | ||||| | Sbjct 1015524 ATACCTTCTTTATC-TTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAAC 1015466 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||||| |||||||||||||| ||||| Sbjct 1015465 TTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | || |||||||| |||||||||||||| Sbjct 1015416 CCACCGCGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAG 1015357 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || || || || ||| |||| || || |||||||| || ||| Sbjct 1015356 AGGGTGCGACCATCCTCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGG 1015297 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | || | ||||| | ||||||| Sbjct 1015296 ATGCCTTCTTTGTCCTGGATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACC 1015237 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||||| || || || || ||||| || || Sbjct 1015236 TCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTGAC 1015202 >seq6 Length=1499889 Score = 123 bits (136), Expect = 2e-23 Identities = 341/514 (66%), Gaps = 13/514 (3%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACT 46146 || ||| | ||||||||| |||||||||| || |||||| | || | || Sbjct 78392 CCTTGCATTCGCAAGAAAGCCGACTGGGCTATTCGATGGATCCAGGATAGTGAATCCACA 78333 Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || || ||||| | | || || || ||| ||||| |||| || ||| |||| Sbjct 78332 TTTGCACAGCGTCTTATTGCTTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTT 78273 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || | || || | | || || | || | ||||||| ||||| || || |||||| Sbjct 78272 GCTTCTATTTTCTGGTTAAAGAAGCGTGGTC-TCATGCCTGGCCTTACTTTCTCCAACGA 78214 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 |||||| || || |||||||| || || || |||||||| || ||| || | ||| Sbjct 78213 GCTGATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCTTGCCTCCTCTT---CTCTCA 78157 Query 46326 CGTGCACGACAAGCTTGC--GCCCGACACCGTGCTG-AGCA-TGTTCAAGGAGGCGGTGG 46381 | | | | || | | | |||| | | || || |||| | ||| || || |||| Sbjct 78156 CCTCCGCCAC---CGTCCCAGCCCAGAAGC-TGTTGCAGCAATCATCATTGAAGCCGTGG 78101 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 || ||| | || || || |||| || || || ||| || || ||||||||| | Sbjct 78100 AAATCGAGCAAGAATTCTTAACGGATGCTCTTCCATGTGCTCTCCTTGGCATGAACTCCA 78041 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC 46501 ||| |||||| | ||||||||||| ||||| ||||| | || || ||| | | Sbjct 78040 AGTTGATGTGCCAATACATCGAGTTCGTAGCCGACCGGTTACTTGTAGCTCTTGGCAACA 77981 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 ||| |||| | || | || ||||| || || ||| | |||||||| || | |||| Sbjct 77980 AGAAACATTATAACTCCACGAACCCATTCGACTTCATGGATAACATCTCGCTTGCCGGCA 77921 Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || ||||| || ||||| || ||||| || Sbjct 77920 AGACCAACTTTTTTGAGAAGCGTGTTGGCGATTA 77887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012569893760