Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq33 129 4e-25
seq9 129 4e-25
seq15 123 2e-23
>seq33
Length=7983
Score = 129 bits (142), Expect = 4e-25
Identities = 82/89 (92%), Gaps = 5/89 (6%)
Strand=Plus/Plus
Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 60
Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991
||||||||||||||||||||||||||||
Sbjct 61 ATTCATGCGCGTCACTAATTAGATGACGA 89
>seq9
Length=1275601
Score = 129 bits (142), Expect = 4e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | ||| ||||| || | || || || ||| ||||| || ||||||||||
Sbjct 1015646 TACCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAG 1015587
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || |||| || | |||||| ||||| || ||||||||||| || || | |
Sbjct 1015586 ACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTG 1015527
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| |||||||| || ||| ||| || || || | || ||||| | ||||
Sbjct 1015526 GGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAA 1015467
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||||| || ||||| || || |||||||| ||||| || |||||
Sbjct 1015466 CTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418
Score = 122 bits (134), Expect = 6e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|| || || | ||| | ||| ||||| || ||||||||||| || || |||||||| ||
Sbjct 1015875 TTTCCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCT 1015816
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|| | ||| | || || | ||| || |||||||| || ||||| ||||| ||||
Sbjct 1015815 GAAAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGT 1015756
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|| | ||||| || ||| ||||||| ||| ||||| | | || || | ||||
Sbjct 1015755 GGAATACCTTCCTTATCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCA 1015696
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||||||||| || || || || || | ||||| || || ||||||||
Sbjct 1015695 ACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646
>seq15
Length=258646
Score = 123 bits (136), Expect = 2e-23
Identities = 80/88 (91%), Gaps = 5/88 (6%)
Strand=Plus/Minus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 258645 TTCCCTTGGCTGTGGTTTCACTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 258586
Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991
||||||||||||||||||||||||||||
Sbjct 258585 TTCATGCGCGTCACTAATTAGATGACGA 258558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947040795409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |