Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq33 129 4e-25 seq9 129 4e-25 seq15 123 2e-23 >seq33 Length=7983 Score = 129 bits (142), Expect = 4e-25 Identities = 82/89 (92%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 60 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 61 ATTCATGCGCGTCACTAATTAGATGACGA 89 >seq9 Length=1275601 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| ||||| || | || || || ||| ||||| || |||||||||| Sbjct 1015646 TACCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAG 1015587 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | |||||| ||||| || ||||||||||| || || | | Sbjct 1015586 ACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTG 1015527 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| ||| || || || | || ||||| | |||| Sbjct 1015526 GGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTGTCGATCGTATCAGAAGACTCAA 1015467 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || ||||| || || |||||||| ||||| || ||||| Sbjct 1015466 CTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || || | ||| | ||| ||||| || ||||||||||| || || |||||||| || Sbjct 1015875 TTTCCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCT 1015816 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | ||| | || || | ||| || |||||||| || ||||| ||||| |||| Sbjct 1015815 GAAAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGT 1015756 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| || ||| ||||||| ||| ||||| | | || || | |||| Sbjct 1015755 GGAATACCTTCCTTATCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGATTCA 1015696 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| || || || || || | ||||| || || |||||||| Sbjct 1015695 ACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646 >seq15 Length=258646 Score = 123 bits (136), Expect = 2e-23 Identities = 80/88 (91%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 258645 TTCCCTTGGCTGTGGTTTCACTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 258586 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 258585 TTCATGCGCGTCACTAATTAGATGACGA 258558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947040795409