Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 226 4e-54 seq6 84.2 3e-11 >seq7 Length=1353353 Score = 226 bits (250), Expect = 4e-54 Identities = 593/899 (66%), Gaps = 12/899 (1%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| |||||||| | |||| | | ||||||| || | ||||| | | | | Sbjct 416200 TCGAATTCGTCTCCGTAGACATCGGCGAGTCCAGATGCCTCGTTTGGACAGAATAGTGTC 416141 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || || | | || || |||||||| || | || ||| |||| || || | || Sbjct 416140 CAATCGCCATTCTTCTCAACCCGTTTCATGAACAAGTCGGGAGTCCAGAGGGCGAGGAAA 416081 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCC 63169 ||||||| || ||| ||| || || || || |||||| || || | ||| | Sbjct 416080 AGATCTCGGGCTCTCACTTCTTCTTTACC---ATGATTTTTACGGAGGTCCAAAAACTCA 416024 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | | ||||| ||||| ||||| | || || || | | | ||||| ||||| || || Sbjct 416023 AATACGTCAGAGTGCCAAGGTTCAAGATAAATAGCAAAAGCACCAGGGCGTTTATTGCCG 415964 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 |||||||| | ||||| || || || ||| | || | | ||| ||||| || ||||| Sbjct 415963 CCCTGATCCACATATCTGGCAGTATTGTTAAAGACACGAAGCATGGGAATGATCCCATTA 415904 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AG 63348 || | ||||| || |||| || ||| ||| | ||||| || | | | | | || Sbjct 415903 GAGGAGCCATTTGTTCCTGCAATGTAGGAGCCAGTTGCACGGAT-TCGGTGAACGTTGAG 415845 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || ||||| || | || || || | || ||| || | ||||||||||| || Sbjct 415844 TCCAATACCCCCAGCAGTCTTGGAAATCAGAGCACATGTCTTCAGTGTATCATAGATCCC 415785 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| |||||||| ||| |||| | || || || ||| || ||| || | || || Sbjct 415784 CTCAATACTATCCTCCTTCATATCAATAAGGAAGCAGGAAGCCATCTGTGGTTGAGGTGT 415725 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||||||||| || | || ||||||||||| ||||| |||||| || | || | ||| Sbjct 415724 TCCCGCATTGAAAAGTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGGTA 415665 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 |||||||| ||| || || ||| |||||||| || || || || ||||| | ||| Sbjct 415664 TGTCTCAATCGCTTTATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATCAT 415605 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||||| || | |||| | | ||| ||| ||| | | | || || | |||| || Sbjct 415604 ATGCTGCGGACGTTCAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGTGT 415545 Query 63649 TTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 || || ||||| || | ||| ||||| || || || |||| ||| | ||||| || Sbjct 415544 CTTGAACCCAAAGTACTGGTAGTTGAAA--TCACGGTCATAAACGATAGCGGAGTTCAGC 415487 Query 63707 TTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTC 63766 | || | ||| | || | ||| | | || || || || ||| | | Sbjct 415486 TCTTCGGCGTGTTTCATTACAATATCGTATATTTTTCTGGATATCATGGGAGCAGGGCGG 415427 Query 63767 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 || || || || ||||| | | | ||| || || || |||| |||| || Sbjct 415426 TTGTTCTTTGGGTTCACATATCTATAGAGATCTTCGATAACGGACGAAAATTGTTTCTTG 415367 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 |||| ||||| | || || ||||| |||||||| || || ||||||||||| || || Sbjct 415366 GTTTGCTTGTGCAAGTTGGACACGGCGATTCTAGCAGCAAGGATGGCATAATCAGGGTG 415308 Score = 125 bits (138), Expect = 9e-24 Identities = 701/1113 (63%), Gaps = 23/1113 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || || || || | | || || ||||||||||| || ||||| | | Sbjct 417403 GTGAATTGAATTGGGGCAGAAGCAGCCATAGTCCGAAGATAGTACATGCCGGTTTTCAAA 417344 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || ||||||||| || || | |||| | || || | | Sbjct 417343 CCTAATTTCCAGCCAGCAAAATGCATGCTAGTAATTTTGCCCATTGTGGGCTCCTTAAGA 417284 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||||| |||||||||||| || || | ||||||||||| | | | Sbjct 417283 TGAATATTGAGGGATTGGGATTGATCGATGAAAGCACCACGATCTGCAGCCATCTGAACA 417224 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || ||| || | ||||||||| | ||| || |||| || || || || || | Sbjct 417223 ATAGTCCGCTGAGAAATTTCCCATACAGTCTTGTAAAGGGCTTTGATGTCATCGGGGATA 417164 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | |||| ||||| || |||||||| || || || | ||| || || | ||| | Sbjct 417163 TTGGGAATATTTTGAATTGAGCCACCATCAGCGATGATGCGATTTTTCATGTTGTCAGAC 417104 Query 62147 CATAATTTTCTCTCGGTTAA----AACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 62202 || | | | ||| || | || | || || || ||||| ||||| ||||| Sbjct 417103 CAAAGT----CCAAGGTCAACAAGATCTTTCAGAAGCCATGGGTTAACAACTTGGAATTC 417048 Query 62203 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 62262 ||| | | |||| ||||| || ||||| ||| || || || | | || || Sbjct 417047 TCCTGCAAGGACTCGCCGAGAATAGATATTTGAGGTGTATGGCTCAAAGCATTCGTTGAA 416988 Query 62263 TCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62321 || | ||||| || | | | ||||| |||||||| || || | | ||| || | | Sbjct 416987 GCCAAGGATTTG-GCTGGTACTAGCAGTGGGCATAGGGGCAACAAGAAGACTGTTGCGTA 416929 Query 62322 GACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 62381 ||||| | || |||| | || |||| |||||| |||||| || || ||| | Sbjct 416928 CACCGTGTTTTGCTATTTCTTTCTTAAGAGAAACCCAATCCCAAAGGTCAGAAGGTGTTA 416869 Query 62382 CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGT 62441 | || | ||| || | | | || ||| ||||||| |||| Sbjct 416868 CGTTCCACATATCATACTGCAAAATTCCCTGAGAAACAGGAGAACCTTCATATGTTTCGT 416809 Query 62442 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62501 |||| ||||| ||| | ||||| || || | || | | ||||| || | Sbjct 416808 ATGGGCCTTCGGTCTTTGAAAGTTCGCAGGATGCAGTCAGGGCGGCATGGTAAATTGTCT 416749 Query 62502 CGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG- 62559 | ||||||| |||| || | ||| || ||| ||||| || || | |||| Sbjct 416748 CAAAGATCTGAATATTCAGCTGCTTAGCCTGAGAGG-AGTCAAAAGGCAAACGT-AGAGC 416691 Query 62560 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 | || || || || | ||||||||| |||| | | || || | ||| | ||| Sbjct 416690 CAAGAAGGCATCAGCGAGTCCTTGAACCCCAAGAGCAATTGGGCGATGACGGAAGTTACT 416631 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 || |||||| |||| || || | || |||| || || || || | ||| | || Sbjct 416630 CTTTCGAGCTTCGGGAACGGGGTAGTGGTTGTTATCAATGATCTTGTTTAAATTGCGCAC 416571 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCC-CATCTATTACAAAC 62737 | |||| | || | | || ||| ||| || | ||||| | || ||| Sbjct 416570 CACAACTTGGGTGACTGCGTGCAATTTACCAAAGTCGTACTCGCCGCGGATAGCGTCAAC 416511 Query 62738 --ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793 ||||| ||| |||| ||||| ||||| || ||||| || |||| | | | ||| Sbjct 416510 GTATGTTGGCAAAGCAAGTGATGCTAGATTGCACACGGCGACTTCATCGGGGGCAGTATA 416451 Query 62794 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 62853 | || || || || || | |||| || | || ||||| | || | || || || Sbjct 416450 CTCAATAATTTCCGTACATAAATTAGAACTTCTAATAGTTCCAAGGTTCTTCTGGTTGCT 416391 Query 62854 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913 ||| ||||| |||||||| ||||| ||||| ||| | ||||| || | |||| ||| Sbjct 416390 CTTCCGATTACAGGCATCCTTGTAAAGCATGAAAGGATTTCCAGTCTCGGTTTGAGCTTC 416331 Query 62914 TATAATCGCTTTCCAGACGACTCGAGCCTTTAT 62946 | || || | ||||| | ||||||| || Sbjct 416330 CAAGATAGCGTACCAGAGCTTTTGAGCCTTGAT 416298 >seq6 Length=1499889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||| | | || | |||||||| || || || || ||||| || || Sbjct 78186 GTGAAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAAGTAAGGCCAGGCATGAGACC 78245 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 |||||| || | ||| || || || ||||| || ||| ||||| || || || || || Sbjct 78246 ACGCTTCTTTAACCAGAAAATAGAAGCAAAAGAACCACTGAAGAAGATACCCTCAACAGC 78305 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGC 32851 || || |||||||| | || | || | || | || || || ||||| ||| Sbjct 78306 GGCGAAAGCAATAAGACGCTGTGCAAATGTGGATTCACTATCCTGGATCCATCGAATAGC 78365 Query 32852 CCAATCGGCCTTCTT 32866 ||| ||||| ||||| Sbjct 78366 CCAGTCGGCTTTCTT 78380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631691104400