Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 116 3e-21
seq5 86.0 5e-12
>seq9
Length=1275601
Score = 116 bits (128), Expect = 3e-21
Identities = 170/236 (72%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| || |||||||| | ||||| || || ||
Sbjct 1015646 ATGCAGATTTTTGTCAAAACACTTACCGGCAAGACCATCACATTAGAAGTTGAATCTTCG 1015705
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || ||| |||||| ||| || || ||||| |||||||| |||
Sbjct 1015706 GACACGATTGA--CAATGTCAAGACAAAAATTCAG-GATAAGGAAGGTATTCCACCCGAC 1015762
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||||||||| ||| | ||||||| || || | || |||
Sbjct 1015763 CAACAGCGCCTCATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACGCTTTCAGACTAC 1015822
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
||||| || ||||| ||| || || || || | || | | |||||||| ||
Sbjct 1015823 AATATCCAGAAAGAGAGCACTCTGCACTTGGTTTTGAGATTGCGTGGAGGAAACTA 1015878
Score = 82.4 bits (90), Expect = 7e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068
|||| |||||| | || || || | || || | || || ||||| ||||| || ||||
Sbjct 1015200 TTGTCAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTCGAGTCTTCTGATACCATCG 1015259
Query 25069 AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
| |||| || ||| ||||||||||| || || || ||||| || || | |
Sbjct 1015260 ACAATGTGAAAACCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGA 1015319
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| || || || |||||| | || |||| |||||| | |||||||| ||||| || |
Sbjct 1015320 TCTTCGCTGGTAAACAACTCGAGGATGGTCGCACCCTCTCGGATTACAACATTCAGAAGG 1015379
Query 25189 AATCCACGCTACA 25201
| ||||| || ||
Sbjct 1015380 AGTCCACTCTCCA 1015392
>seq5
Length=1732373
Score = 86.0 bits (94), Expect = 5e-12
Identities = 131/183 (72%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | ||||| || ||||||| | || || |||||| || || ||
Sbjct 840272 TTCGTTAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGCGATACAATT 840213
Query 25068 GA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123
|| |||| ||||| | ||| ||||| || || ||||| || |||||||||||
Sbjct 840212 GATAATGTCAAG--AGCAAGAT-TCAG-GACAAGGAGGGTATTCCGCCAGACCAACAGCG 840157
Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183
| ||||| ||||| || || | || |||| ||||||| || ||||||| ||||| ||
Sbjct 840156 ATTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGAGCGATTATAATATCCA 840097
Query 25184 AAA 25186
|||
Sbjct 840096 AAA 840094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327794033785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |