Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 116 3e-21 seq5 86.0 5e-12 >seq9 Length=1275601 Score = 116 bits (128), Expect = 3e-21 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || |||||||| | ||||| || || || Sbjct 1015646 ATGCAGATTTTTGTCAAAACACTTACCGGCAAGACCATCACATTAGAAGTTGAATCTTCG 1015705 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || ||| |||||| ||| || || ||||| |||||||| ||| Sbjct 1015706 GACACGATTGA--CAATGTCAAGACAAAAATTCAG-GATAAGGAAGGTATTCCACCCGAC 1015762 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||||||||| ||| | ||||||| || || | || ||| Sbjct 1015763 CAACAGCGCCTCATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACGCTTTCAGACTAC 1015822 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| || ||||| ||| || || || || | || | | |||||||| || Sbjct 1015823 AATATCCAGAAAGAGAGCACTCTGCACTTGGTTTTGAGATTGCGTGGAGGAAACTA 1015878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 25009 TTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCG 25068 |||| |||||| | || || || | || || | || || ||||| ||||| || |||| Sbjct 1015200 TTGTCAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTCGAGTCTTCTGATACCATCG 1015259 Query 25069 AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 | |||| || ||| ||||||||||| || || || ||||| || || | | Sbjct 1015260 ACAATGTGAAAACCAAGATCCAGGACAAAGAAGGCATCCCCCCCGACCAGCAACGATTGA 1015319 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | || || || |||||| | || |||| |||||| | |||||||| ||||| || | Sbjct 1015320 TCTTCGCTGGTAAACAACTCGAGGATGGTCGCACCCTCTCGGATTACAACATTCAGAAGG 1015379 Query 25189 AATCCACGCTACA 25201 | ||||| || || Sbjct 1015380 AGTCCACTCTCCA 1015392 >seq5 Length=1732373 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | ||||| || ||||||| | || || |||||| || || || Sbjct 840272 TTCGTTAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGCGATACAATT 840213 Query 25068 GA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || |||| ||||| | ||| ||||| || || ||||| || ||||||||||| Sbjct 840212 GATAATGTCAAG--AGCAAGAT-TCAG-GACAAGGAGGGTATTCCGCCAGACCAACAGCG 840157 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | ||||| ||||| || || | || |||| ||||||| || ||||||| ||||| || Sbjct 840156 ATTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGAGCGATTATAATATCCA 840097 Query 25184 AAA 25186 ||| Sbjct 840096 AAA 840094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327794033785