Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017-
06-05] 39 sequences; 21,865,028 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 2e-23
seq5 98.7 2e-15
seq8 86.0 1e-11
>seq9
Length=1275601
Score = 125 bits (138), Expect = 2e-23
Identities = 151/204 (74%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336
|| || || || ||||| || ||||||| ||| ||||| || ||||| | ||||| ||
Sbjct 1015099 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCA 1015040
Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||| |||| || ||||| ||||| ||| || || || || ||||| || |
Sbjct 1015039 GCGAAAATCAAGCGTTGTTGG---TCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTC 1014983
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || || || | |||||| || || || || || ||||| ||||| || |||||
Sbjct 1014982 TTAACATTATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGG 1014923
Query 288454 GTCTTGACGAATATCTGCATTATG 288477
||||||||||| |||||||| |||
Sbjct 1014922 GTCTTGACGAAGATCTGCATAATG 1014899
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||||||||| || || || | || ||||| ||||| || | |||||| || ||||||
Sbjct 1015608 TCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAG 1015549
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || || || || |||||| ||||||||||| || || || | ||| |||||
Sbjct 1015548 ATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTG 1015489
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || ||||| | ||||| || || ||||| | || || |||
Sbjct 1015488 TCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACG 1015429
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 1015428 AAAATTTGCAT 1015418
Score = 104 bits (114), Expect = 6e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || || || | ||| || || || || || || || | |
Sbjct 1015416 CCACCGCGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAG 1015357
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | |||||| || |||||||||| || || || |||
Sbjct 1015356 AGGGTGCGACCATCCTCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGG 1015297
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| |||||||| |||||||| || | |||||| || || || | ||| || || ||
Sbjct 1015296 ATGCCTTCTTTGTCCTGGATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACC 1015237
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || || || ||||| || || |||||||||||
Sbjct 1015236 TCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTGAC 1015202
>seq5
Length=1732373
Score = 98.7 bits (108), Expect = 2e-15
Identities = 134/183 (73%), Gaps = 8/183 (4%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||||||||| ||| | ||||| || || || | || ||||| ||||| |||
Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153
Query 288346 AGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401
| |||||||| ||| || || || || || ||||| || || ||| || || ||
Sbjct 840154 AATCGCTGTTG---GTCTGGCGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACATT 840209
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||||||||| || || || || ||||| ||||| ||||| || ||||| ||
Sbjct 840210 ATCAATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAAC 840269
Query 288462 GAA 288464
|||
Sbjct 840270 GAA 840272
>seq8
Length=1298916
Score = 86.0 bits (94), Expect = 1e-11
Identities = 247/370 (67%), Gaps = 10/370 (3%)
Strand=Plus/Plus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAG-AAGATTAGGGAAACA 326022
|| || || |||||||| | |||| || || ||||||| || ||| || | || ||
Sbjct 1214629 ACAATCGGGGTGATGAATTCGATCAAAAAACCCGGAATTTTAAGCAAGCTTGGAAAAGCA 1214688
Query 326023 GCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 326082
|| |||| | | || || | || || ||| || | || ||| ||| ||||||
Sbjct 1214689 ACT-TGGAGATAATTTATTAAAAGTCCCTTAATATGGCTGCCATCATAATCTTGGTCGGT 1214747
Query 326083 CATGATCATCACATGACCGTAACGAAG-CGAGGACGTGTCTTTGTACACTTTACCGGTTT 326141
||||||||| | |||||||||||||| | | | || ||| | || |||| ||
Sbjct 1214748 CATGATCATAAGGTGACCGTAACGAAGGCCACGG-GTATCTGTATATTCTTTCTTATGTT 1214806
Query 326142 GAAGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCA 326198
| | |||||||| | || | ||| |||||||| || || | || ||| | |
Sbjct 1214807 GTAAGCCGAGAAAATTCTTAATATTCTG-GATTTCTTGATTTTTTGAAAT--TTGATCGA 1214863
Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258
| ||||||||||| || || | || |||||||| || || || || || | |||
Sbjct 1214864 CAGATGCATCGCGCACATTGAGAAGCTTTCCACGGAGGGGAAAAACACCGAAGAGATCGG 1214923
Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 326318
| || ||||||| |||||| || ||||| | || ||||| || || || || |
Sbjct 1214924 GTCCAACCACGGCTCTCCCTGCCATCGCAAGACCCTTGGCTGAATCTCCTTCAGTAAGGA 1214983
Query 326319 TGAGAGTGCA 326328
|||| |||||
Sbjct 1214984 TGAGTGTGCA 1214993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653810541442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |