Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-23 seq5 98.7 2e-15 seq8 86.0 1e-11 >seq9 Length=1275601 Score = 125 bits (138), Expect = 2e-23 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 || || || || ||||| || ||||||| ||| ||||| || ||||| | ||||| || Sbjct 1015099 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCA 1015040 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| |||| || ||||| ||||| ||| || || || || ||||| || | Sbjct 1015039 GCGAAAATCAAGCGTTGTTGG---TCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTC 1014983 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | |||||| || || || || || ||||| ||||| || ||||| Sbjct 1014982 TTAACATTATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGG 1014923 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||||||||| |||||||| ||| Sbjct 1014922 GTCTTGACGAAGATCTGCATAATG 1014899 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || || | || ||||| ||||| || | |||||| || |||||| Sbjct 1015608 TCTTTTTGGATGTTGTAATCAGACAGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAG 1015549 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || || || || |||||| ||||||||||| || || || | ||| ||||| Sbjct 1015548 ATTAGGCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTTGTTTTGACGTTG 1015489 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || ||||| | ||||| || || ||||| | || || ||| Sbjct 1015488 TCGATCGTATCAGAAGACTCAACTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACG 1015429 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1015428 AAAATTTGCAT 1015418 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || || || | ||| || || || || || || || | | Sbjct 1015416 CCACCGCGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCCGAG 1015357 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | |||||| || |||||||||| || || || ||| Sbjct 1015356 AGGGTGCGACCATCCTCGAGTTGTTTACCAGCGAAGATCAATCGTTGCTGGTCGGGGGGG 1015297 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || | |||||| || || || | ||| || || || Sbjct 1015296 ATGCCTTCTTTGTCCTGGATCTTGGTTTTCACATTGTCGATGGTATCAGAAGACTCGACC 1015237 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || ||||| || || ||||||||||| Sbjct 1015236 TCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTGAC 1015202 >seq5 Length=1732373 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||||||||| ||| | ||||| || || || | || ||||| ||||| ||| Sbjct 840094 TTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAATC 840153 Query 288346 AGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 | |||||||| ||| || || || || || ||||| || || ||| || || || Sbjct 840154 AATCGCTGTTG---GTCTGGCGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACATT 840209 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||||||| || || || || ||||| ||||| ||||| || ||||| || Sbjct 840210 ATCAATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAAC 840269 Query 288462 GAA 288464 ||| Sbjct 840270 GAA 840272 >seq8 Length=1298916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 247/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAG-AAGATTAGGGAAACA 326022 || || || |||||||| | |||| || || ||||||| || ||| || | || || Sbjct 1214629 ACAATCGGGGTGATGAATTCGATCAAAAAACCCGGAATTTTAAGCAAGCTTGGAAAAGCA 1214688 Query 326023 GCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 326082 || |||| | | || || | || || ||| || | || ||| ||| |||||| Sbjct 1214689 ACT-TGGAGATAATTTATTAAAAGTCCCTTAATATGGCTGCCATCATAATCTTGGTCGGT 1214747 Query 326083 CATGATCATCACATGACCGTAACGAAG-CGAGGACGTGTCTTTGTACACTTTACCGGTTT 326141 ||||||||| | |||||||||||||| | | | || ||| | || |||| || Sbjct 1214748 CATGATCATAAGGTGACCGTAACGAAGGCCACGG-GTATCTGTATATTCTTTCTTATGTT 1214806 Query 326142 GAAGGCCGAGAATTTGTTTGAGCG-CTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCA 326198 | | |||||||| | || | ||| |||||||| || || | || ||| | | Sbjct 1214807 GTAAGCCGAGAAAATTCTTAATATTCTG-GATTTCTTGATTTTTTGAAAT--TTGATCGA 1214863 Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258 | ||||||||||| || || | || |||||||| || || || || || | ||| Sbjct 1214864 CAGATGCATCGCGCACATTGAGAAGCTTTCCACGGAGGGGAAAAACACCGAAGAGATCGG 1214923 Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 326318 | || ||||||| |||||| || ||||| | || ||||| || || || || | Sbjct 1214924 GTCCAACCACGGCTCTCCCTGCCATCGCAAGACCCTTGGCTGAATCTCCTTCAGTAAGGA 1214983 Query 326319 TGAGAGTGCA 326328 |||| ||||| Sbjct 1214984 TGAGTGTGCA 1214993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653810541442