Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq6 96.9 3e-15 seq7 82.4 8e-11 >seq9 Length=1275601 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||||||| | || | | | ||||| ||||| |||||||| || | Sbjct 1015644 CCACCGCGCAACCGCAAAACAAGGTGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGAC 1015585 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||||||||||||||| ||||||| || || ||||| || || Sbjct 1015584 AGTGTGCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATTAGGCGTTGCTGGTCTGGTGGG 1015525 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||||||||| || ||| | |||||||| | ||| || | || || | ||||| | Sbjct 1015524 ATACCTTCTTTATC-TTGAATCTTTGTTTTGACGTTG-TCGATCGTATCAGAAGACTCAA 1015467 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||| || || | |||||||| ||||| ||||| Sbjct 1015466 CTTCTAATGTGATTGTTTTTCCGGTTAAGGTTTTTACGAAAATTTGCAT 1015418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | |||||| || || | | ||| || || || |||||||| Sbjct 1015872 CCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAGTCTGAA 1015813 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || |||| | |||| || ||||||||||| || || Sbjct 1015812 AGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCGGGTGGA 1015753 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || ||| ||||||| || | |||| | | ||||| | || || | Sbjct 1015752 ATACCTTCCTTATCC-TGAATTTTTGTCTTGACATTGT-CAATCGTGTCCGAAGATTCAA 1015695 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || || || || ||||| |||||||||||||| Sbjct 1015694 CTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || | || || ||||||||||||||||| | Sbjct 1015383 GACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGACCATCCTCGAGTTGTTTACCAGCG 1015324 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | || || ||||| || || || ||||||||||| ||| || ||| | | Sbjct 1015323 AAGATCAATCGTTGCTGGTCGGGGGGGATGCCTTCTTTGTCCTGGATCTTGGTTTTCACA 1015264 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || ||||| ||||| || Sbjct 1015263 TTG-TCGATGGTATCAGAAGACTCGACCTCAAGGGTAATAGTCTTGCCAGTAAGAGTCTT 1015205 Query 138600 TACAA 138604 |||| Sbjct 1015204 GACAA 1015200 >seq6 Length=1499889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 242/360 (67%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||||| || ||| ||||||| |||| || || ||||| || || ||||| ||| Sbjct 78239 ATGCCTGGCCTTACTTTCTCCAACGAGCTGATCTCTCGTGACGAGGGTCTTCACACTGAC 78180 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTG 52601 ||||| |||||| || | | | | | ||| | | | | | | | || Sbjct 78179 TTTGCTTGCCTCCTCTTCT---CTCACCT--CCGCCACCGTCCCAGCCCAGAAGCTGTTG 78125 Query 52602 -AGCA-TGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGG 52659 |||| | ||| || || |||| ||||| | || || || |||| || || || Sbjct 78124 CAGCAATCATCATTGAAGCCGTGGAAATCGAGCAAGAATTCTTAACGGATGCTCTTCCAT 78065 Query 52660 TCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATC 52719 | || || ||||||||| | ||| |||||| | ||||||||||| || || || | Sbjct 78064 GTGCTCTCCTTGGCATGAACTCCAAGTTGATGTGCCAATACATCGAGTTCGTAGCCGACC 78005 Query 52720 GTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTT 52777 | | | || ||||| |||| | | || | | ||| | || || || || || Sbjct 78004 GGTTACTTGT--AGCTCTTGGCAACAAGAAACATTATAACTCCACGAACCCATTCGACTT 77947 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | ||||| ||||||| ||||||||||||||||| |||||||| || ||||| || Sbjct 77946 CATGGATAACATCTCGCTTGCCGGCAAGACCAACTTTTTTGAGAAGCGTGTTGGCGATTA 77887 >seq7 Length=1353353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 |||||||| || || |||||| ||||| ||||| | ||||||| ||||| | || Sbjct 415726 GTTCCCGCATTGAAAAGTGTGGGAGAAGCGTGGGTAAAAAATTTTTGGGACATCAGGTGG 415667 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || || || || || | || || || || ||||| || | || |||||||| | | Sbjct 415666 TATGTCTCAATCGCTTTATCAATGTCCTCATGATGAATACCAACGGCAACGCGCATAATC 415607 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493 || |||||||||||||| || ||| | || || | | ||||| | || || Sbjct 415606 ATATGCTGCGGACGTTCAGCAACTTTGCCGTTGATTCTTAGTAGATACGACCTCTCCAGT 415547 Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGC 154543 || ||| | || || |||| ||| | ||||| | |||| | |||| || Sbjct 415546 GTCTTGAACCCAAAGTACTGGTAGTTGAAATCACGGTCATAAACGATAGC 415497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262158072080