Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 seq5 116 4e-21 seq2 89.7 6e-13 >seq9 Length=1275601 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 ||||||||||| ||||| ||||||||||| || ||||| | || || ||||| || || Sbjct 1015099 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGTTTACCA 1015040 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||||||| || ||||| | || | || ||||||||| |||||| |||| Sbjct 1015039 GCGAAAATCAAGCGTTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTAGTCTTA 1014980 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | || ||||| || || || || | |||||||| ||||| ||||| || Sbjct 1014979 ACATTATCAATGGTATCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1014920 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 1014919 TTGACGAAGATCTGCAT 1014903 Score = 118 bits (130), Expect = 1e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || ||||| | || | ||| |||| |||| || ||||| || |||||||||||| Sbjct 1015878 TAGTTTCCTCCACGCAATCTCAAAACCAAGTGCAGAGTGCTCTCTTTCTGGATATTGTAG 1015819 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || || || || | || || || ||||||||||| || || | |||||| |||||| Sbjct 1015818 TCTGAAAGCGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATGAGGCGCTGTTGGTCG 1015759 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | | ||||| ||| || || |||||| | | | |||||| ||| Sbjct 1015758 GGTGGAATACCTTCCTTATCCTGAATTTTTGTCTTGACATTGTCAATCGTGTCCGAAGAT 1015699 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 1015698 TCAACTTCTAATGTGATGGTCTTGCCGGTAAGTGTTTTGACAAAAATCTGCAT 1015646 >seq5 Length=1732373 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||||||||| || ||| | |||||| | || || |||||||| |||||||| | Sbjct 840092 CCTTTTGGATATTATAATCGCTCAAAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAAA 840151 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||| ||||| | ||| | | |||||||||| ||||| |||||| | Sbjct 840152 TCAATCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTAT 840211 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || |||||||| || || || | |||||||| ||||| || || || ||||| | Sbjct 840212 CAATTGTATCGCTCGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGA 840271 Query 46584 AG 46585 || Sbjct 840272 AG 840273 >seq2 Length=1931404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || || ||||| ||||||||||| Sbjct 802200 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCGAA 802141 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| ||||||||||| | || | || ||||||||| Sbjct 802140 AATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 802102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238124446280