Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ophidiomyces_20ophiodiicola_20[genbank_20GCA_5F002167195.1_202017- 06-05] 39 sequences; 21,865,028 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq6 114 1e-20 seq2 100 3e-16 seq5 82.4 8e-11 >seq9 Length=1275601 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| | Sbjct 1014903 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCCAGC 1014962 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| ||||| ||||| || || | |||||| Sbjct 1014963 GATACCATTGATAATGTTAAGACTAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 1015022 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| || |||||||| || || | ||||||||| |||||||||| Sbjct 1015023 CAACGCTTGATTTTCGCTGGTAAACAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 1015082 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| || || || ||||| || || Sbjct 1015083 ATCCAGAAGGAGAGTACCCTCCACTTGGTCCTCCG 1015117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| |||||||| | || || || | | Sbjct 1015646 ATGCAGATTTTTGTCAAAACACTTACCGGCAAGACCATCACATTAGAAGTTGAATCTTCG 1015705 Query 38304 GACA-GCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || || | | |||| |||||| | || || || || ||||| |||||| Sbjct 1015706 GACACGATTGACAATG--TCAAGACAAAAATTCAGGATAAGGAAGGTATTCCACCCGACC 1015763 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | || ||||| || || || || | || || || ||||||| Sbjct 1015764 AACAGCGCCTCATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACGCTTTCAGACTACA 1015823 Query 38422 ACATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| |||| ||| || ||||| ||||| || | ||| | || || Sbjct 1015824 ATATCCAGAAAGAGAGC-ACTCTGCACTTGGTTTTGAGATTGCGTGGAGG 1015872 >seq6 Length=1499889 Score = 114 bits (126), Expect = 1e-20 Identities = 343/521 (66%), Gaps = 14/521 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| |||||| || ||||| || ||||||||||| || || || || | Sbjct 77868 CATGACACCAGCTTTTTGGTAATCGCCAACACGCTTCTCAAAAAAGTTGGTCTTGCCGGC 77927 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTG---CTTGGTGCC 132707 | || ||| ||| || || || ||||| | | ||| || || |||| |||| Sbjct 77928 AAGCGAGATGTTATCCATGAAGTCGAATGGGTTCGTGGAGTTATAATGTTTCTTGTTGCC 77987 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 | || | || || | || |||||| ||||||||||||||||| |||| | | | Sbjct 77988 AAG-AGCT--ACAAGTAACCGGTCGGCTACGAACTCGATGTATTGGCACATCAACTTGGA 78044 Query 132768 ATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || ||| |||| || || || || || | || ||||||||| | | Sbjct 78045 GTTCATGCCAAGGAGA-GCACATGGAAGAGCATCCGTTAAGAATTCTTGCTCGATTTCCA 78103 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || ||| |||| | ||| | | ||| || || || | || || Sbjct 78104 CGGCTTCAATGATGATTGCTGCAACAGCTTCTGGGCTGGGACGGTGGCGGAGGTGAGAGA 78163 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | |||||||||||| || | |||||||| | || || || |||||| || Sbjct 78164 AGAGGAGGCAAGCAAAGTCAGTGTGAAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGA 78223 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 |||| | ||| |||||||| || || || || | ||| || || | || ||| || Sbjct 78224 AAGTAAGGCCAGGCATGAGACCACGCTTCTTTAACCAGAAAATAGAAGCAAAAGAACCAC 78283 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT--C 133064 ||||||| ||||| || || |||||||| | || |||| | || |||| || | Sbjct 78284 TGAAGAAGATACCCTCAACAGCGGCGAAAGCAATAAGACGCTGTGCAAATGTGGATTCAC 78343 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT 133105 | | ||| |||||| || | ||||| ||||| |||||| Sbjct 78344 TATCCTG--GATCCATCGAATAGCCCAGTCGGC--TTTCTT 78380 >seq2 Length=1931404 Score = 100 bits (110), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 38323 AAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382 ||||||| || | ||||| ||||| || ||| | ||||| ||||| || |||| ||| | Sbjct 802089 AAGAAAACCTC-TAGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCG 802147 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||||||||||| || | ||||||||| |||||||||||||| ||||| Sbjct 802148 GCAAACAGCTGGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 802199 >seq5 Length=1732373 Score = 82.4 bits (90), Expect = 8e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||| ||||| |||||||| | || |||||| | | ||| | | Sbjct 840272 TTCGTTAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCGAGCGATACAATT 840213 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || || | ||||| ||||| ||||| | ||||||||||| Sbjct 840212 GATAATG--TCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCGCCAGACCAACAGCGAT 840155 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | |||| ||| || || ||||| || || | ||||| | | ||| || || ||||||| Sbjct 840154 TGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTTTGAGCGATTATAATATCCAAA 840095 Query 38431 AGG 38433 ||| Sbjct 840094 AGG 840092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172556165760